Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_P23
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 47 9e-06
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 47 9e-06
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 47 9e-06
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 47 9e-06
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.6
AC084158-38|AAM15617.2| 488|Caenorhabditis elegans Hypothetical... 28 4.6
AC084158-37|AAM15615.2| 486|Caenorhabditis elegans Hypothetical... 28 4.6
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 6.1
AF098995-7|AAC67481.1| 253|Caenorhabditis elegans F-box b prote... 27 8.1
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 538 GRPRRTRVPDKPNYPLSLWSIMXNCI 615
GR RRT VP++PN P++LWSIM NCI
Sbjct: 49 GRQRRTTVPERPNLPINLWSIMKNCI 74
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 538 GRPRRTRVPDKPNYPLSLWSIMXNCI 615
GR RRT VP++PN P++LWSIM NCI
Sbjct: 442 GRQRRTTVPERPNLPINLWSIMKNCI 467
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 538 GRPRRTRVPDKPNYPLSLWSIMXNCI 615
GR RRT VP++PN P++LWSIM NCI
Sbjct: 227 GRQRRTTVPERPNLPINLWSIMKNCI 252
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 538 GRPRRTRVPDKPNYPLSLWSIMXNCI 615
GR RRT VP++PN P++LWSIM NCI
Sbjct: 366 GRQRRTTVPERPNLPINLWSIMKNCI 391
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -2
Query: 188 FFIT*HIFSTLFL----YA*LFNNSCETLQNCNFMVKRKYFSIFLP 63
FFI+ H+ +L L Y+ LF+ + +TLQ+C F ++F FLP
Sbjct: 65 FFISIHLVLSLLLKIVIYS-LFSGAPQTLQSCEFSFPSEFFD-FLP 108
>AC084158-38|AAM15617.2| 488|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1c protein.
Length = 488
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 421 ERAESAMGGADGSTTPSLPAKDTDIVVWPHVSQAAGCVDGRPRRTRVPDKPNYPLSLWSI 600
E+A A+ TT P K+ D++ A D +R NYP +LW+
Sbjct: 22 EKASGEPKKAEDPTTKKRPRKNEDLL-----KDAPETSDDEDQRAETAGSRNYPANLWNR 76
Query: 601 MXN 609
+ N
Sbjct: 77 LKN 79
>AC084158-37|AAM15615.2| 486|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1a protein.
Length = 486
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 421 ERAESAMGGADGSTTPSLPAKDTDIVVWPHVSQAAGCVDGRPRRTRVPDKPNYPLSLWSI 600
E+A A+ TT P K+ D++ A D +R NYP +LW+
Sbjct: 22 EKASGEPKKAEDPTTKKRPRKNEDLL-----KDAPETSDDEDQRAETAGSRNYPANLWNR 76
Query: 601 MXN 609
+ N
Sbjct: 77 LKN 79
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical protein
C34F11.5 protein.
Length = 894
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 254 LTQWRRASQPTWMIRLHL*LKYQLIEKTK*RTVKVRMNQKVKQ*QKHNR*YLWRIRSERR 433
L +WR + + R LK ++ +K K + +K K+ +K R + + ++
Sbjct: 797 LREWRVVRKLLMVKRARRTLKKKMRKKVKQQMLKKMEEAAAKENEKEIRKTKKKSKDKKE 856
Query: 434 ARWEAPTEAPHRRFRPK 484
R E E H++ +PK
Sbjct: 857 GRKEESKEKAHKKSKPK 873
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 160 HYFCTHNYLTIRVKLSKIVI 101
HYFCT +L IR+ L +++
Sbjct: 53 HYFCTRTFLFIRISLIFLIV 72
>AF098995-7|AAC67481.1| 253|Caenorhabditis elegans F-box b protein
protein 25 protein.
Length = 253
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 241 LHPQFRCLELSRYHRCQFFLSLNTYLVH 158
+H +F C+EL YHR + F L V+
Sbjct: 149 VHLEFMCIELQDYHRLKLFPFLKWLTVY 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,717
Number of Sequences: 27780
Number of extensions: 225379
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -