Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P21
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    84   3e-17
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    29   0.77 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   5.4  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   9.5  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = +3

Query: 501 MFGAIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKWVRVKLQGNALX 680
           + G I +  +L +V       +EI+W+DF   +L+KG+VE+L V+N+  VRV L+G    
Sbjct: 136 ILGGILVAYILYNVLSPNANMQEITWQDFRQQFLDKGLVERLVVVNRNMVRVILRGGVAS 195

Query: 681 GK-VIWFAIGSVDSFERNLXNAQIEMSIDPPNFVPVIYXTE 800
           G    +F+IGS+DSF+R L +AQ ++ I P  FVPV Y  E
Sbjct: 196 GSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDE 236


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 QRYILMDISCSLSAYLLDSVLRQWYEFCKKPPKGFEKYFQ 302
           +RY+ + +  S+    LD VL+ W E    P    EK+FQ
Sbjct: 98  RRYLPISVIESVLTEYLDQVLKVWLESKTNPCLDMEKFFQ 137


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 25/93 (26%), Positives = 40/93 (43%)
 Frame = -2

Query: 799 SVX*ITGTKLGGSMLISICAFXRLRSNESTLPIANQITFPXNAFP*SFTRTHFLLITSSF 620
           SV   T T    + L S+ +     ++ + L  AN  T    +       T  +L TSS 
Sbjct: 361 SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSV 420

Query: 619 STTPLFKYKLTKSLQLISLYLNSKYATEASNVT 521
           S+TPL     T +    S  L+S  +T A++ +
Sbjct: 421 SSTPLSSANSTTATSASSTPLSSVNSTTATSAS 453



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = -2

Query: 799 SVX*ITGTKLGGSMLISICAFXRLRSNESTLPIANQITFPXNAFP*SFTRTHFLLITSSF 620
           SV   T T    + L S+ +     ++ + L  AN  T    +       T  +L TSS 
Sbjct: 475 SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSV 534

Query: 619 STTPLFKYKLTKSLQLISLYLNSKYATEASNVT 521
           S+TPL     T +    S  L S  +T A++ +
Sbjct: 535 SSTPLSSANSTTATSASSTPLTSVNSTTATSAS 567


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 304 RVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQINGT 414
           RV+ +K LK    M  LH+  P+ H NR L  Q+  T
Sbjct: 467 RVSYQKLLKSHV-MNKLHMAHPKSHTNRSLLRQLKNT 502


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 292 NTSNRVAV--RKTLKLRKKMQVLHLKVPRLHRNRPLHHQING 411
           N++NRV +  +K  +L       H K+ + HRNR  H+  NG
Sbjct: 289 NSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNG 330


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 724 SNESTLPIANQITFPXNAFP*SFTR-THF 641
           SN S+ P++     P N FP S +R THF
Sbjct: 584 SNMSSSPVSGNSNTPFNKFPNSVSRNTHF 612


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 480 QDKEKWMMFGAIGIVTLLASVAYFELRYREISW 578
           QDK +W++     I+T+L     F+++   + W
Sbjct: 102 QDKSRWVLLIIWSIITILTIDKKFKIKESYLEW 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,688
Number of Sequences: 5004
Number of extensions: 51123
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)