Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P21
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739...    48   7e-06
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780...    48   1e-05
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258...    29   4.3  
01_01_0739 - 5749703-5750035                                           28   7.5  

>05_05_0098 +
           22373384-22373522,22373566-22373772,22373879-22373953,
           22374611-22374744,22375189-22375674,22375854-22376621,
           22377367-22377594,22378294-22378773
          Length = 838

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 23/114 (20%)
 Frame = +3

Query: 528 LLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKK----WVRVKLQGNALXGKV-- 689
           +L+S++      +EIS+++F N  L  G+V+++ V NK     +VR   Q N+       
Sbjct: 172 MLSSLSSSSSDQKEISFQEFKNKLLEPGLVDRIVVSNKSVAKVYVRSSPQSNSQGQNTDA 231

Query: 690 -----------------IWFAIGSVDSFERNLXNAQIEMSIDPPNFVPVIYXTE 800
                             +F IGSVDSFE  L  AQ  + +DP +FVPV Y  E
Sbjct: 232 IITTNDVPSKHTPSRYKYYFNIGSVDSFEEKLEEAQEALGVDPHDFVPVTYVAE 285


>01_06_1310 -
           36176008-36176472,36176547-36176774,36177313-36178080,
           36178250-36178732,36179883-36180010,36180539-36180607,
           36180688-36180892,36181005-36181067
          Length = 802

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
 Frame = +3

Query: 516 GIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKWVRVKLQGNALXGKV-- 689
           G++ L AS +  E   +EIS+++F N  L  G+V+ + V NK   +V ++ +    ++  
Sbjct: 141 GLLLLSASASSSE---QEISFQEFKNKLLEPGLVDHIVVSNKSIAKVYVRSSPSIDRIQD 197

Query: 690 --------------------IWFAIGSVDSFERNLXNAQIEMSIDPPNFVPVIYXTE 800
                                +F IGSVDSFE  L  AQ  + IDP  +VP+ Y TE
Sbjct: 198 SDIHITTSHLPGIESPSSYKYYFNIGSVDSFEEKLQEAQKALEIDPHYYVPITYTTE 254


>11_06_0031 +
           19425011-19425113,19425552-19425637,19425732-19425829,
           19425950-19426067,19426200-19426289,19426770-19427074,
           19427162-19427357,19427435-19427617,19427713-19427982,
           19428906-19429151,19429633-19429704,19430087-19430104
          Length = 594

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 216 GCNLCPLKCIFDSCECVNL 160
           GC +C  KC FD+ E +NL
Sbjct: 57  GCGICVKKCPFDAIEIINL 75


>01_01_0739 - 5749703-5750035
          Length = 110

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 510 AIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKW 647
           A G   L A+VA   LRY +++W+D V  Y   G + K +   K+W
Sbjct: 23  AAGQAFLQAAVAD-ALRYTKMTWQDMVEEYRRAGKLHKYDP-GKEW 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,784
Number of Sequences: 37544
Number of extensions: 298705
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)