Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P21
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7424| Best HMM Match : AAA (HMM E-Value=0)                          46   3e-05
SB_3115| Best HMM Match : AAA (HMM E-Value=0)                          42   6e-04
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)                 29   4.4  
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
          Length = 294

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 696 FAIGSVDSFERNLXNAQIEMSIDPPNFVPVIYXTE 800
           F IGSV++FERNL + Q EM+IDP  +VPV Y  E
Sbjct: 10  FTIGSVENFERNLESVQQEMNIDPSYWVPVTYVKE 44


>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
          Length = 913

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 696 FAIGSVDSFERNLXNAQIEMSIDPPNFVPVIYXTE 800
           F+I S+DSFE+ + +AQ E+ I P  FVP+ Y T+
Sbjct: 10  FSIASLDSFEKKIHHAQSELRISPQEFVPIKYRTQ 44


>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
          Length = 681

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 250 SGMNSVKSRLRVLKNTSNRVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHH 399
           SG++S+KS LRVL    NR+     L+   K+ VL L   R+ +   L H
Sbjct: 201 SGLSSLKS-LRVLMLGKNRIRKINNLEALTKLDVLDLHGNRISKIENLSH 249


>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 316 RKTLKLRKKMQVLHLKVPRLHRNRPLHH 399
           R+  +L  +   LH + PRLHR RP  H
Sbjct: 173 RRRTRLHTRRPRLHTRRPRLHRRRPRLH 200


>SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 533 CFSCVF*IKIQ--RDKLERFCQFVFKQRCGRETR 628
           C +C    + Q  RDK+ + CQ  F  RCGR  R
Sbjct: 94  CPNCAMVFRKQPLRDKISKTCQTQFCYRCGRHFR 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,035,997
Number of Sequences: 59808
Number of extensions: 367021
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)