Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_P18
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.86
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 29 2.6
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 29 4.6
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14) 29 4.6
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 28 6.0
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43) 28 6.0
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 28 8.0
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 7e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 286 MIPHKTERGKNALRRLRTYDGCPPPFD 366
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 35.5 bits (78), Expect = 0.040
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Frame = +1
Query: 49 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 192
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79
Query: 193 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 363
H + ++ILW+ V GM+P K ++RL ++ P+
Sbjct: 80 HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFEDEHHPY 135
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 53 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 175
SM+V +C ++W + P F +L+W+ N S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +1
Query: 418 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 591
PG C VG+L H W + R L R+ + ++ A + + +G+ S++
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAAAGGRTADQGERSGDSASRS 923
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 452 PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVRR 580
P K +GNT V ++ GR + L R +P++ N G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 418 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 534
PG C VG+L H W + R L R+ + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445
>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
Length = 271
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 409 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 573
C KPG+++ HV + H ++ D R + + K A+K +Y KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164
>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 621
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 269 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 126
H + AL+W+G R FTL + + + LS + K + + C ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577
>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
Length = 443
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 466 WKYR-DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 633
W+ R V++ E K+K + + +A KK+K+ K + + SK + P + Y+
Sbjct: 378 WRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVPGLSCFYQTNYH 434
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 230 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 120
R G+ + + ++ ++ LFL PE++ R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,079,014
Number of Sequences: 59808
Number of extensions: 467686
Number of successful extensions: 1946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -