Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P16
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    25   0.76 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   4.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.3  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   9.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.3  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 624 TY*IFNVSCSDIEKYKAVLFIQ-FDITHDVYCHVTWFKPAF 505
           T+ I+  +  + E +KA    + FD+T D Y H+T  K  F
Sbjct: 51  THLIYGYAGINAETFKAQPLNELFDVTRDNYRHITELKRRF 91


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 268 LDPLNIPKIRILQGEGPVNVN 330
           L+P N+P++  L   G VNV+
Sbjct: 178 LEPANVPQMITLTFNGAVNVD 198


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 268 LDPLNIPKIRILQGEGPVNVN 330
           L+P N+P++  L   G VN++
Sbjct: 185 LEPANVPQMITLTFNGAVNID 205


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 793 NLPANFLIGDVKNKNKN 843
           N+P+  ++GD+ N N N
Sbjct: 442 NMPSTSVVGDMLNMNWN 458


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +1

Query: 640 MNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSK--TIXDILLGFTXTLFHNLP 801
           MNN+   ++ L    N ++      V   L PIL +  TI  +L  F   L    P
Sbjct: 325 MNNILPCVKELVADPNQHVKSALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECP 380


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 220 ISVQHHGNNHRTRGHFSSTFSRNPVEFG 137
           ISV       R   H ++T+ + P+ FG
Sbjct: 329 ISVIQDDAQMRLNKHVTTTYPKQPLRFG 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,674
Number of Sequences: 336
Number of extensions: 4375
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)