Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P16
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)              31   1.6  
SB_58924| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       30   2.7  
SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)             29   3.6  
SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)                  29   4.8  

>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
          Length = 227

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 729 QRFRNRPPVLVKICIGAFLQRLDAVKEIIHAQLQST 622
           +R R R  V  + CIG  +Q +D + E IHA++Q T
Sbjct: 25  ERHRERAAVDKQRCIGDRMQEIDTMIEKIHAKIQYT 60


>SB_58924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 163 TCLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQGEGPVNVNAAL 339
           T  K D   +DCS   +  +FD +    P+  +  ++ +  P  R+L    PVNVN +L
Sbjct: 40  TDYKWDDSKEDCSPYDIGLVFDKIASYSPQDKLKFIENVWKPVSRLLPSATPVNVNTSL 98


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = +1

Query: 277  LNIPKIRILQGEGPVNVNAALDNVTVTG-------FGKTEVLMSQVDSKTYDFYT 420
            + + +IR+ QGE  +  +  L + T+TG       FG+ +V+ S++++K  D +T
Sbjct: 2446 IGLIRIRVFQGETVLTDSGDLYDTTITGGRLGMFVFGQEDVIWSRLEAKCADSFT 2500


>SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)
          Length = 1072

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 139 RTQPDFVKTCLKSDPEFDD-CSRDAVQKLFDAL 234
           R   D V TCL  DPEFD+ C+R     L   L
Sbjct: 451 RPHQDLVSTCLFLDPEFDEPCARHQSLDLLSVL 483


>SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)
          Length = 676

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 19  RNTTSSCLLEA--DSTPGSINKMQLKFIIVTLVIHHASADYFRTQPDFVKTCLKS 177
           +N  ++ LL+A  ++   ++ K+ L  +++ +  +H       T+P+FV  C KS
Sbjct: 512 QNKGANALLDAMRNNAECAMEKVYLNNVVIDVETNHLIEQILETRPNFVVACTKS 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,401,761
Number of Sequences: 59808
Number of extensions: 519468
Number of successful extensions: 1629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)