Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_P16
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 33 0.34
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 29 3.2
Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical pr... 29 4.2
U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin red... 29 5.5
AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin r... 29 5.5
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 28 9.6
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 28 9.6
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 28 9.6
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 32.7 bits (71), Expect = 0.34
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +1
Query: 499 RGKCWFEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLRMNNLFDGIQSLEE 678
R + W ++TI + Y+ DG++ ++ A ++I + + + L++
Sbjct: 424 RNRLWMYNISLTICGIVTAFCYKFDGYILLDIYAVLFGFTIASYVCLTSVILVDLLGLDK 483
Query: 679 STNAY-LNENWRPVSESLRPILSKTIXDILLGFT 777
TNA+ L W+ V + P++S + D+ +T
Sbjct: 484 LTNAFGLLLLWQGVGTVIGPLVSGYLADLTGNYT 517
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 502 GKCWFEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLRMNNLFDGIQSLEES 681
GK S T+D +S + + DGF+F VT + + +R+ + G+ L S
Sbjct: 153 GKYELVDSLATVDTMSPFGIVQSDGFLFLEVTGKLDRETRDLYSMRLTAIDQGVPEL--S 210
Query: 682 TNAYLN 699
++ +LN
Sbjct: 211 SSCHLN 216
>Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical
protein F56D5.3 protein.
Length = 449
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Frame = +1
Query: 514 FEPSNMTIDIVSDIKL-YEKDGFVFFNVTA--------AHVKYSIGGLKLRMNNLFDGIQ 666
F+ T++ + + YEK GF F +T AH + S + + I+
Sbjct: 254 FQDKGTTVEDAKQMCIEYEKRGFDFVELTGGTAEKFVFAHQRESTVIREAFFVEFAETIR 313
Query: 667 SLEESTNAYLNENWRPVSESLRPILSKTIXDILLGFTXTLFHNLPANFLIGDVKNKNKN 843
+ ++T YL +R + I T I LG T +LP L GDV + K+
Sbjct: 314 PVFKNTVVYLTGGFRTTGAMVDAITRNTTQGIGLGRPATAEPDLPKKLLNGDVPSAVKD 372
>U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin
reductase protein 1 protein.
Length = 667
Score = 28.7 bits (61), Expect = 5.5
Identities = 28/95 (29%), Positives = 33/95 (34%)
Frame = +1
Query: 166 CLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQGEGPVNVNAALDN 345
C K P + S A + D L G+ GMPP PK R E P L
Sbjct: 10 CFKRQPRQQEASSPANPHVSDTLSMGVAASGMPP------PK-RPAPAESPTLPGETL-- 60
Query: 346 VTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIE 450
V G E L +SK FY K +E
Sbjct: 61 VDAPGIPLKEALKEAANSKIVIFYNSSDEEKQLVE 95
>AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin
reductase protein.
Length = 667
Score = 28.7 bits (61), Expect = 5.5
Identities = 28/95 (29%), Positives = 33/95 (34%)
Frame = +1
Query: 166 CLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQGEGPVNVNAALDN 345
C K P + S A + D L G+ GMPP PK R E P L
Sbjct: 10 CFKRQPRQQEASSPANPHVSDTLSMGVAASGMPP------PK-RPAPAESPTLPGETL-- 60
Query: 346 VTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIE 450
V G E L +SK FY K +E
Sbjct: 61 VDAPGIPLKEALKEAANSKIVIFYNSSDEEKQLVE 95
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 181 PEFDDCSRDAVQKLFDALGPGLPEIGMPPLD-PLN-IPKIRILQGEG--PVNVNAALDNV 348
P FDDC+ A+ + +A+G L + + LD P N P +QG+G VN L+ +
Sbjct: 3303 PTFDDCNMTALVQEGEAIGHRLLKFSVSDLDGPKNGAPFTVEIQGDGAKSFKVNEKLELL 3362
Query: 349 T 351
T
Sbjct: 3363 T 3363
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 181 PEFDDCSRDAVQKLFDALGPGLPEIGMPPLD-PLN-IPKIRILQGEG--PVNVNAALDNV 348
P FDDC+ A+ + +A+G L + + LD P N P +QG+G VN L+ +
Sbjct: 3303 PTFDDCNMTALVQEGEAIGHRLLKFSVSDLDGPKNGAPFTVEIQGDGAKSFKVNEKLELL 3362
Query: 349 T 351
T
Sbjct: 3363 T 3363
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 181 PEFDDCSRDAVQKLFDALGPGLPEIGMPPLD-PLN-IPKIRILQGEG--PVNVNAALDNV 348
P FDDC+ A+ + +A+G L + + LD P N P +QG+G VN L+ +
Sbjct: 3303 PTFDDCNMTALVQEGEAIGHRLLKFSVSDLDGPKNGAPFTVEIQGDGAKSFKVNEKLELL 3362
Query: 349 T 351
T
Sbjct: 3363 T 3363
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 544 RCLLSCYLVQTSIF-LGRPKVLLEFFLLNHTCLLF 443
RCL +C+ V+T F +G VL+ F L H+ ++
Sbjct: 39 RCLCNCFHVKTGAFIIGCVHVLMILFFLIHSLFVY 73
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 544 RCLLSCYLVQTSIF-LGRPKVLLEFFLLNHTCLLF 443
RCL +C+ V+T F +G VL+ F L H+ ++
Sbjct: 39 RCLCNCFHVKTGAFIIGCVHVLMILFFLIHSLFVY 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,177
Number of Sequences: 27780
Number of extensions: 405376
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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