Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P16
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    93   2e-21
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    28   0.12 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.88 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.2  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 93.5 bits (222), Expect = 2e-21
 Identities = 66/247 (26%), Positives = 124/247 (50%), Gaps = 8/247 (3%)
 Frame = +1

Query: 85  LKFIIVTLVIHHASADYFRTQPDFVKTCLKSDP--EFDDCSRDAVQKLFDALGPGLPEIG 258
           ++F ++T ++  A A      P+  + C +S P  E++ C  +AV+    +L  GL    
Sbjct: 7   IRFFVLTTMLMMAIAVEL---PNNWRICDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFK 63

Query: 259 MPPLDPLNIPKIRILQGEGPVNVNAALDNVTVTGFGKT-EVLMSQVDSKTYDFYTKVRVP 435
           + P++PL +  ++I + +G V +     N+ + G  K  E+    +D       ++   P
Sbjct: 64  ILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNP 123

Query: 436 KIRIEGTYDLKGKILVIPLVGRGKCWFEPSNMTI-DIVS--DI--KLYEKDGFVFFNVTA 600
           ++     Y ++GK+L++P+ G GK     SN+T+ D+ S  DI  + YEK+G  +  +  
Sbjct: 124 QVDFVADYKIEGKVLLLPVRGAGK-----SNITMYDLKSHNDIYCEKYEKNGETYLRIKK 178

Query: 601 AHVKYSIGGLKLRMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKTIXDILLGFTX 780
             VK++   +KLR  NLFDG + L E  N ++NEN   + + L+    +T   +      
Sbjct: 179 HAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDN 238

Query: 781 TLFHNLP 801
            +F+ +P
Sbjct: 239 EIFNRVP 245


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 207 CCTEIIRRLGARSTGNRYASTRPIKYSENKNFAR 308
           C T  I  L A S     A T+PIKY+++KN  R
Sbjct: 269 CSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 302


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = -2

Query: 244 DLAPRRRIISVQHHGNNHRTRGHFSSTFSRNPVEFGNNQH 125
           DL    R  +  +  NNH    H  +  S       NNQH
Sbjct: 407 DLIRNSRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQH 446


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 473 FPFKSYVPSILIL 435
           F F++Y+PSILI+
Sbjct: 244 FVFQTYLPSILIV 256


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 210 CTEIIRRLGARSTGNRYASTRPIKYSE 290
           CT  I  L A S     A TRP+ Y +
Sbjct: 149 CTASILNLCAISLDRYLAVTRPVSYPQ 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,146
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)