Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P15
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)     124   6e-29
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          31   1.4  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        30   1.8  
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    30   1.8  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   5.5  
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 28   9.5  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   9.5  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score =  124 bits (300), Expect = 6e-29
 Identities = 71/199 (35%), Positives = 112/199 (56%)
 Frame = +1

Query: 166 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 345
           MG  MA NL+ +G+ V  +D   ++++   + G   A +            ++L S+ V 
Sbjct: 1   MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAETPDEVAMKTNKIVTMLPSSSV- 59

Query: 346 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 525
                         + G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  
Sbjct: 60  --------------QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105

Query: 526 TLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAXLTNNMLMGITGMATAXCMNM 705
           TL FM GG++E FE++  +L  MG    H G  G+GQ A + NNML+ ++ + TA  MN+
Sbjct: 106 TLTFMVGGKEEGFEQAKDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVSMIGTAEAMNL 165

Query: 706 GIKMGLEPKVLLDVLNXSS 762
           GI++GL+ +++  ++N SS
Sbjct: 166 GIRLGLDAEMIAKIINSSS 184


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 35/128 (27%), Positives = 61/128 (47%)
 Frame = +1

Query: 121 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 300
           +S + + V  +G GN+G  +A  L K   +V+ +D  ++  N     G T  NS      
Sbjct: 3   TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62

Query: 301 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 480
                 + L   + V    L   G+++  K+GS+ ID +T D N   ++  +A  KG+  
Sbjct: 63  DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121

Query: 481 TDAPVSGG 504
            +AP++GG
Sbjct: 122 VEAPLTGG 129


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 136 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 261
           K +A +GLG +G  +A  +   G    GYDP     +AA  N
Sbjct: 9   KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 388 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFE 567
           + G ++ID    +     +      E+GL F  + VSGG  GA+    + M GG ++ + 
Sbjct: 139 ESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP-SLMPGGSEKAWP 197

Query: 568 RSLPLLKVMGAK 603
              P+ + + AK
Sbjct: 198 HIKPIFQAIAAK 209


>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +2

Query: 143 WLSSASETWEDSWLRTWLKRVSQFAATILPKMH 241
           W+    + W D W+  W+  +    A + P +H
Sbjct: 28  WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 409 DSSTIDPNVPKQIFPI-ALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLL 585
           ++ +  P    Q F I  L      +  P+SGGV G  +AT +  + G+K   + ++  L
Sbjct: 263 ETKSFAPPTTAQSFAIPGLSNAASTSKQPISGGVGGTSSATSSGASTGQKSSMQSAMKRL 322

Query: 586 KVMGAK 603
           +++  K
Sbjct: 323 QMVKKK 328


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 456 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 310
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298


>SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 59  KWPRAQY*ALSVCTQPPDGRIVLTPTRMWLSSASETW 169
           KW   Q    S+C + P+ +I  +  R +LS++S+ W
Sbjct: 3   KWSGNQVLGQSLCLRGPEQKIASSCVRAFLSTSSDDW 39


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 456 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 310
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 456 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 310
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 478 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQI 624
           F D P + GV+  +N  ++F+   +K D   +   L+ +G+K+  C  +
Sbjct: 70  FNDTPNTFGVLSKENGKISFV-DSQKYDHAINYAGLRDLGSKEIQCNLV 117


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 121 SSNTDKNVAFLGLGNMGGFMAANLVKKGFT-VRGYDPSKDALNAAAKNGV 267
           S    ++   L +G+  G  A  LVK GFT +   DPS+ +   A K  +
Sbjct: 61  SQGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNL 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,468,149
Number of Sequences: 59808
Number of extensions: 614698
Number of successful extensions: 1744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)