Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P13
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      110   1e-24
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                39   0.004
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 37   0.015
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       33   0.19 
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    29   4.1  
SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)                28   9.4  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             28   9.4  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  110 bits (265), Expect = 1e-24
 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
 Frame = +2

Query: 71  VETISPGDESTYPKS-GQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEG 247
           +E +S  ++ T     G T+ +HYTG L NG KFDSS DRGK F F +GK  VI+GW++G
Sbjct: 29  IEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQG 88

Query: 248 VAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNII 421
           +  M +GE+ KLT  P  AYG+ G    IPP++TL  DVEL+ ++  +    N + +I
Sbjct: 89  LLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGMI 146


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
 Frame = +2

Query: 74  ETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDE 244
           ET  P D     K G  VVVHYTG + +G  FD++RD  K   PF+F IG   VI+G+++
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163

Query: 245 GVAKMSVGERAKLTCSPDYAYGQQGH---PGVIP-PNSTLIFDVEL 370
           GV  M VG++ K+   P  AYG++G    PG +   N+TL +++EL
Sbjct: 164 GVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +2

Query: 62   GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 217
            GV    +S G  +     G TVVV Y G   NG++FDS+   G PF+F +G+
Sbjct: 873  GVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 110 KSGQTVVVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 235
           ++G  V V YTG L      GK FDS+    K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 119 QTVVVHYTGTL---TNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 289
           Q  V H+   L   +  ++ D SR  G+PF+  +GK   +  W+E +  M V E A+ TC
Sbjct: 93  QLAVFHFKTFLMEQSEKQELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152

Query: 290 SPDYAYG 310
                 G
Sbjct: 153 DKSVVAG 159


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 272 RAKLTCSPDYA----YGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNIIVMSIAL 439
           R   +CSP  A    + Q+G   ++ PNST +F + L R +  QF       +I  S+ L
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQFAFAT-SKVIETSLHL 332

Query: 440 *NSKSQLITLFFITYSH 490
               + L+   + TY+H
Sbjct: 333 RTHPTTLMLAPYYTYAH 349


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 230 RGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDV 364
           R  D     +S GE     CSP+        PG++PP+S  + D+
Sbjct: 538 RQGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDL 582


>SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 308 RKHSQESRLIWHAHLQTSLPHPH 240
           RK+SQ + +IW+ H Q    H H
Sbjct: 109 RKNSQRNNIIWYNHFQQEHKHQH 131


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 164  KFDSSRDRGKPFKFRIG----KSEVIRGWDEGVAKMSVGERAKLT 286
            KFD +   G PFK R+G      E ++ +  G++    G+ A+ T
Sbjct: 3054 KFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAEFT 3098


>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
          Length = 398

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 261 DIFATPSSQPRITSDFPILNLKGLPRSRDESNFLP 157
           D+ +T  SQP+I S   +    G+PR R  SN  P
Sbjct: 214 DVSSTKRSQPKIGSSALLPKSFGVPRDRSPSNEKP 248


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  STYPKSGQTVVVHYTGTLTNGKKFD 172
           + YPKSGQT  +     + NG +FD
Sbjct: 36  TAYPKSGQTWTIEIVKQVLNGGEFD 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,876,164
Number of Sequences: 59808
Number of extensions: 450743
Number of successful extensions: 901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)