Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P11
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   1.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   1.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    24   4.8  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   8.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   8.5  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    23   8.5  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   8.5  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    23   8.5  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 192
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 192
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 111 ISFNSIISSGWATVYVCTHII 173
           I F+SII  GW  V + T +I
Sbjct: 140 IVFDSIIGGGWPAVLISTAMI 160


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 61  IVPPLSHKYGQRSLYLV 11
           I  PLS ++G+R +YL+
Sbjct: 97  IFAPLSEQFGRRPIYLI 113


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 84  YTLTILLYSISFNSIISS 137
           +T T  LYS +FN++ISS
Sbjct: 529 FTWTCELYSENFNTVISS 546


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 61  IVPPLSHKYGQRSLYLV 11
           I  PLS ++G+R +YL+
Sbjct: 97  IFAPLSEQFGRRPIYLI 113


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 61  IVPPLSHKYGQRSLYLV 11
           I  PLS ++G+R +YL+
Sbjct: 97  IFAPLSEQFGRRPIYLI 113


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 63  YFQPSKCYTLTILLYSISFNSIISS 137
           YF    C T TI   S+S++  ISS
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISS 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,249
Number of Sequences: 5004
Number of extensions: 16061
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)