Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P11
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    27   4.2  
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976...    26   7.4  
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429...    26   7.4  

>05_01_0003 +
           29476-29847,30192-31519,31612-31722,31836-32112,
           32233-33714
          Length = 1189

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 36  YLCESGGTIYFQPSKCYTLTILLYSISFNSIISSGWATVYVCTHIIKQLRFIYI 197
           YL     TIYF+P+K     IL +  +     +    ++Y+   I+K L+ ++I
Sbjct: 329 YLRPDDSTIYFKPTKAAISAILHFFTAMMLYGNFIPISLYISIEIVKLLQALFI 382


>04_03_0471 -
           16292916-16293209,16294558-16294803,16297557-16297692,
           16297765-16297983,16298194-16298572,16298967-16299225,
           16300044-16300114,16300604-16300625
          Length = 541

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 47  KWWNNLFSTI*MLYINDTAI 106
           +WW +L+  I + YI+D A+
Sbjct: 244 EWWKDLYKYIGLTYISDRAV 263


>02_01_0579 -
           4293528-4294117,4294561-4294762,4296145-4296348,
           4296425-4296585,4296665-4297158,4297526-4297584,
           4297766-4297841,4298511-4298552,4298757-4298860,
           4299071-4299280
          Length = 713

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 48  SGGTIYFQPSKCYTLTILLYSISFNSIISSGWATVYVCTHIIKQ 179
           +G  +   P  C  L I++    FN+    GW+     +H++K+
Sbjct: 213 TGCVVSSGPESCAKLDIVVLEGDFNNEDEEGWSGEEFESHVVKE 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,597,667
Number of Sequences: 37544
Number of extensions: 82133
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)