Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P11
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 29   1.1  
SB_55459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.5  
SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)               27   4.4  
SB_16423| Best HMM Match : ATE_C (HMM E-Value=0.00015)                 26   7.6  

>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 78   KCYTLTILLYSISFNSIISSGWATVYVCT 164
            K Y++ +   S+   S++ SGW TVY+ T
Sbjct: 974  KRYSMVLTGISVLGKSLVGSGWTTVYLIT 1002


>SB_55459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 30  CPYLCESGGTIYFQPSKCYTLTILLYSISFNSIISSGWATV 152
           C Y CE+G   Y +   C +  ILL  + + ++   G+A +
Sbjct: 2   CRY-CEAGNRYYVREKDCLSCCILLMKVQYFTLRMYGYAWI 41


>SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)
          Length = 852

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 1   LPYLLNRATFVHI 39
           LPYLLNRAT +H+
Sbjct: 393 LPYLLNRATALHV 405


>SB_16423| Best HMM Match : ATE_C (HMM E-Value=0.00015)
          Length = 192

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 176 FYDMSTYINSCPTRRNN*IKTNGI*QYR*C-ITFRWLKI 63
           +Y M  YI+SCP  R    K N    Y  C  T+RW+ I
Sbjct: 67  YYYMGFYIHSCPKMR---YKGNYYPSYLVCPETYRWVPI 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,808,539
Number of Sequences: 59808
Number of extensions: 104356
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)