Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P11
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z81132-6|CAB03437.1|  315|Caenorhabditis elegans Hypothetical pr...    27   3.9  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned expre...    25   8.9  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    25   8.9  

>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
           protein R08E3.1b protein.
          Length = 1465

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 212 SAHGKYVNKS*LFYDMSTYINSCPTRR 132
           S    + NK+ +FY +S ++NS P +R
Sbjct: 122 SVDNVFRNKNSIFYQLSPFVNSAPPQR 148


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
           protein R08E3.1a protein.
          Length = 1512

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 212 SAHGKYVNKS*LFYDMSTYINSCPTRR 132
           S    + NK+ +FY +S ++NS P +R
Sbjct: 122 SVDNVFRNKNSIFYQLSPFVNSAPPQR 148


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 60  IYFQPSKCYTLTILLYSISFNSIISSGWATVYVCTHIIKQLRFIYIF 200
           I+F   K   + +LL +I+    ISS +A ++V   + + LRF   F
Sbjct: 68  IFFNSKKKLPILLLLLTITLFWFISSIFALIFVLQDLKRYLRFHIYF 114


>Z81132-6|CAB03437.1|  315|Caenorhabditis elegans Hypothetical
           protein T26E4.8 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 215 LSAHGKYVNKS*LFYDMSTYINSCPTR 135
           LSA+  Y + S L Y M TY+ + PTR
Sbjct: 244 LSAYQNYYSSSLLEYCMLTYLKNGPTR 270


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 90  LTILLYSISFNSIISSGWATVYVCTHII 173
           LTIL Y +SF SI S     +Y C   I
Sbjct: 223 LTILDYPVSFLSITSVNLPLIYSCVSFI 250


>U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned
           expression site protein23 protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 39  LCESGGTIYFQPSKCY-TLTILLYSISFNSIISSGWATVYVC 161
           +C SG  I F   K Y T+ +L++ I + S I   W   Y+C
Sbjct: 331 MCASGVLILFGLQKNYPTIYVLVFLIGYAS-IEFIWDACYLC 371


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 1   LPYLLNRATFVHIYVKVVEQFIFNHLNVI 87
           LP   ++A FV + V+ ++QF+F HL ++
Sbjct: 162 LPDTSDQAAFVTV-VQGIQQFLFQHLTLV 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,244,703
Number of Sequences: 27780
Number of extensions: 86491
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)