Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P10
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   34   0.048
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  29   2.4  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   3.1  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_3676| Best HMM Match : Cuticle_2 (HMM E-Value=3.2)                  28   4.2  
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   7.3  
SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15)                   27   9.6  
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)                   27   9.6  
SB_20082| Best HMM Match : DUF378 (HMM E-Value=4.1)                    27   9.6  

>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 34.3 bits (75), Expect = 0.048
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +3

Query: 138 CPENA--HWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLV--FNADRK--CVPISDC 299
           CPENA   +    C  TC DP   N  C    ++ C C +  V   NA  K  C+   +C
Sbjct: 180 CPENAVFKYCTSACPETCHDPPGRNKTCSMRCVEGCECKEEFVQRVNAVGKVQCIKRKEC 239


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 192 PYLTNTACVGALIQTCHCNDGLVFNADRKCVPIS 293
           PY     C+G L ++ +  DG++   DR  VP+S
Sbjct: 561 PYGEPVTCLGHLCESIYAQDGVLLLNDRVVVPMS 594


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +3

Query: 201  TNTA---CVGAL-IQTCHCNDGLVF-NADRKCVPISDC 299
            TNT    C+  L   TC C  G  F N+ R+C+ I++C
Sbjct: 2113 TNTCPGRCINRLGSYTCDCPRGYTFDNSSRRCIDINEC 2150


>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 165

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 204 NTACVGALIQ-TCHCNDGLVFNADRKCVPISDC 299
           N  C  +L   TC C +G   N+  KC  +++C
Sbjct: 15  NEVCANSLGSFTCQCAEGYERNSQGKCADVNEC 47


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 120 STTEYGCPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDG 254
           S     C          CVR    P      C+G L QT HC +G
Sbjct: 686 SLCSVSCSNGTRTRSRECVRKSTSPADYIARCIGELNQTKHCFEG 730


>SB_3676| Best HMM Match : Cuticle_2 (HMM E-Value=3.2)
          Length = 322

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 36  VVXKNITKMAAKQYFIVF--LIVAVMAL-EASTTEYGCPENA 152
           V  KN+T   A+QY I F  L++A+ A   AS  ++  P +A
Sbjct: 110 VYSKNMTMQGARQYSIAFSDLVLAISAFYSASKLQFASPYSA 151


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
 Frame = +3

Query: 99  AVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNAD 272
           AV A+        CP     ++    C R C +      AC    +  C C +G +   D
Sbjct: 743 AVKAVFLMVEPVTCPSGMEHSECSSACPRDCSNMNSDPNACNSKCVDGCFCPEGKI--QD 800

Query: 273 R-KCVPISDC 299
           R KCV    C
Sbjct: 801 RGKCVDPGQC 810


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 234 TCHCNDGLVFNADRK-CVPISDC*NV 308
           TC C  G   +ADR+ C+ +++C +V
Sbjct: 19  TCQCIAGYTLSADRRHCIDVNECQDV 44


>SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 220 PTQAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIRNT 83
           P+Q +L    ++ ++T      ++F+   YSVV  +  +T TI  T
Sbjct: 664 PSQVLLGTSATTVIITNDDKAIFSFAAASYSVVEDTGYVTVTINKT 709


>SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15)
          Length = 165

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +3

Query: 138 CPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDG 254
           CP         C R CD P      CV    +TC C  G
Sbjct: 53  CPAGFTGDGRACTRICDHPCPYGMTCVAP--RTCRCPKG 89


>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
          Length = 133

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
 Frame = +3

Query: 138 CPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADR-KCVPISDC 299
           CP     ++    C R C +      AC    +  C C +G +   DR KCV    C
Sbjct: 57  CPSGMEHSECNSACPRDCSNMNSDPNACNSKCVDGCFCPEGKI--QDRGKCVDPGQC 111


>SB_20082| Best HMM Match : DUF378 (HMM E-Value=4.1)
          Length = 568

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 171 CVRTCDDPYLTNTACVGALIQTCHCNDGLVFNA 269
           C RTC    L +T C+ A +     NDG VF A
Sbjct: 238 CDRTCSYWDLVSTTCMYARVTHFFDNDGTVFLA 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,766
Number of Sequences: 59808
Number of extensions: 184445
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)