Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P09
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)                 28   9.8  
SB_15440| Best HMM Match : ig (HMM E-Value=5.5e-06)                    28   9.8  

>SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)
          Length = 948

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 605 ITDVLMAKTIEFRVTI----GSSSRIFHLGNASPLVFGLEEYLIGDDGQLIAKEPVTIQS 772
           +++V   +T  ++ T+    GS+SRI HL    PL        + DD +L ++   T+Q+
Sbjct: 98  LSNVTSLQTGHYKCTVTNARGSNSRIVHLLVKEPLSMCSNYVTLADDSRLSSRVTATLQT 157


>SB_15440| Best HMM Match : ig (HMM E-Value=5.5e-06)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 605 ITDVLMAKTIEFRVTI----GSSSRIFHLGNASPLVFGLEEYLIGDDGQLIAKEPVTIQS 772
           +++V   +T  ++ T+    GS+SRI HL    PL        + DD +L ++   T+Q+
Sbjct: 57  LSNVTSLQTGHYKCTVTNARGSNSRIVHLLVKEPLSMCSNYVTLADDSRLSSRVTATLQT 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,850,414
Number of Sequences: 59808
Number of extensions: 383733
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)