Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P08
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     44   1e-04
01_06_1051 - 34127251-34127510,34128625-34128868                       33   0.10 
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393...    28   3.9  
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830...    28   3.9  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    27   8.9  

>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +3

Query: 285 RPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRH 389
           +P+ +KR R HG+  R ST  GR++I RR+ KGRH
Sbjct: 108 QPSTIKRKRTHGFLTRKSTKGGRKVIARRIAKGRH 142


>01_06_1051 - 34127251-34127510,34128625-34128868
          Length = 167

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 309 RRHGWDFRMSTPNGRRIIMRRLLKGRHVL 395
           R HG+  RM T  GR+++ RR  KGR VL
Sbjct: 125 RTHGFRRRMRTTAGRKVLKRRRAKGRRVL 153


>06_01_0552 -
           3935804-3936145,3936247-3936346,3936600-3936725,
           3936802-3936991,3937105-3937338,3937640-3937788,
           3937890-3938073,3938159-3938195,3938293-3938508
          Length = 525

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 392 NMSPFQ*SPHYNAATIWSR--HPEIPSVTSNSFNLIRSW 282
           N   FQ +P Y +A +W R    ++ S T N  N+IR++
Sbjct: 367 NKETFQPNPDYYSALLWHRLMGTKVLSATFNGTNMIRTY 405


>03_05_0042 + 20180151-20180468,20181595-20181665,20182929-20183087,
            20183598-20183664,20183913-20184008,20184687-20184733,
            20185113-20185193,20185704-20185806,20185967-20186028,
            20187188-20187302,20193191-20195087,20195206-20195492
          Length = 1100

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 317  RMGFQDVYSKWSPHYNEEIIERETCSHTLDKIR 415
            RMG  + YS    H N ++I R  C+ TL  +R
Sbjct: 1002 RMGSGNNYSSGLAHVNTQLINRVVCTRTLYYLR 1034


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 48  KSQILLMII*KYLTVSSLHCFVSVEKVTVNIMSGLISTILQPLKLI 185
           K  +L+ ++ +Y    ++ C V V+++TV   +  IS ILQ LK +
Sbjct: 328 KFSVLINVLSRYGLQENMKCIVFVKRITV---ARAISNILQNLKCL 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,447
Number of Sequences: 37544
Number of extensions: 175461
Number of successful extensions: 305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)