Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P08
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    27   8.0  

>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical protein
            C16A3.7 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 319  P*RRTLLTSLGRGK*HLTLVLIEDNKNASGLTK 221
            P +R+++ +  RGK H  LVLI D  N  G  K
Sbjct: 926  PPKRSIVLTAVRGKSHQPLVLISDLVNYKGALK 958


>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +3

Query: 93  SSLHCFVSVEKVTVNIMSGLISTILQPLKLIRQSSIYTGVSSSLVR-----PDAFLLSSI 257
           S LHC         ++++ LI+ I QPLK +       G+  SL+      P    L+S 
Sbjct: 202 SVLHCEQLFNSSDADLVNQLIANISQPLKRLELDEYECGLLKSLLLLSSSFPGEVQLNSQ 261

Query: 258 RTKVRC 275
           +++ +C
Sbjct: 262 QSRAKC 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,075,728
Number of Sequences: 27780
Number of extensions: 167426
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)