Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P02
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               332   2e-91
SB_5167| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   7.7  
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)                  28   7.7  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  332 bits (816), Expect = 2e-91
 Identities = 157/192 (81%), Positives = 175/192 (91%)
 Frame = +3

Query: 213 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 392
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 393 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 572
           FRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188

Query: 573 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCXGAREAAFRNIKTXAECVADELINA 752
           PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLC GARE+AFRNIK+ AEC+ADELINA
Sbjct: 189 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINA 248

Query: 753 AKGSSNSYAHQK 788
           AKGSSNSYA +K
Sbjct: 249 AKGSSNSYAIKK 260



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +3

Query: 213 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 317
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_5167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 40  TVRGYNFYLVIEK*V*FKSITTWYYKFCQVTVNKYN 147
           T++ Y+F   I +   F+  TT YY FC  T   Y+
Sbjct: 472 TIKYYDFSHTIAEYHDFRHTTTKYYDFCHTTTKYYD 507


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 252 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 383
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
          Length = 1062

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 94  SITTWYYKFCQVTVNKYNNIFRYQSWPRRTGMTT*PRQAA 213
           S TTWY        +K+ N+ +++S P R    T   QAA
Sbjct: 719 SSTTWYQVVDTACQHKWRNLHKWRSLPERQRNPTAAEQAA 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,432,668
Number of Sequences: 59808
Number of extensions: 503801
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)