Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P02
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   315   2e-86
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    30   1.7  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  315 bits (774), Expect = 2e-86
 Identities = 150/182 (82%), Positives = 163/182 (89%)
 Frame = +3

Query: 243 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 422
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 423 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 602
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 603 AGTVRRQAVDVSPLRRVNQAIWLLCXGAREAAFRNIKTXAECVADELINAAKGSSNSYAH 782
           AGTVRRQAVDV+PLRRVNQAIWLLC GAREAAFRN+KT AEC+ADELINAAKGSSNSYA 
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAI 196

Query: 783 QK 788
           +K
Sbjct: 197 KK 198


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 88  FKSITTWYYKFCQVTVNKYNNIFRYQSWPRRT 183
           + +++T +YKFC     K++ IF  + W  RT
Sbjct: 16  YSAMSTNFYKFCHFEPKKFDRIFLLKLWKFRT 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,141
Number of Sequences: 27780
Number of extensions: 376331
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)