Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_O15
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 156 3e-39
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 34 0.021
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 31 0.15
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 30 0.46
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 29 0.60
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 2.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 3.2
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 3.2
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 4.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.6
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 5.6
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 26 7.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.4
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 9.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 9.8
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 9.8
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 156 bits (379), Expect = 3e-39
Identities = 80/210 (38%), Positives = 121/210 (57%)
Frame = +3
Query: 171 SQKLLLECGLVRPTTSGFFTLLPLARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWA 350
+ +LL++ G ++P+ G F LPL R +K+ +L+ + S GA +SL L+S +W
Sbjct: 27 ANQLLIDMGFIQPSMPGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIWE 86
Query: 351 KTGRXXXXXXXXXXXXDRHNKKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQISNKYR 530
K+GR DR++++ LAPT+EE + ++ + S KQLPI +YQI K+R
Sbjct: 87 KSGRWQKTGSELFRLHDRNDREMCLAPTHEEDVTRTMATIID-SQKQLPIRVYQIGRKFR 145
Query: 531 DELRPKHGLLRAREFSMLDAYGAHASSACALQVYGRMATAYEHLFRALHLKVHKVEAPSG 710
DELRP+ GLLR REF M D Y A A++ Y + AY F+ + L V+A +G
Sbjct: 146 DELRPRGGLLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVMVKAATG 205
Query: 711 DMGGSFSHEWQLAATSGEDQIKVCPSCSHA 800
++GG+ SHE+ GED I CPSC ++
Sbjct: 206 NIGGNLSHEFHYRHPVGEDVIYTCPSCHYS 235
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 34.3 bits (75), Expect = 0.021
Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
Frame = +3
Query: 288 IESSGAQRLSLPALTSAGLWAKTGRXXXXXXXXXXXXDRHNKKYLLAPTYEEAIAELLSD 467
+E G L P + + + AKT + D ++YL+A + + A +
Sbjct: 191 LEKRGYIALQAPTMLNKDVMAKTAQLEQFDEELYKVIDGDEERYLIATSEQPISAYHSGE 250
Query: 468 LKPISYKQLPIILYQISNKYRDEL----RPKHGLLRAREFSMLDAYGAHASSACALQVYG 635
+QLP+ S YR E R G+ R F ++ + + + +
Sbjct: 251 WFEKPSEQLPLKYAGYSTCYRREAGSHGRDAWGIFRVHAFEKIEQF-VLTDPEKSWEAFT 309
Query: 636 RMATAYEHLFRALHLKVHKVEAPSGDMGGSFSHEWQLAA-TSGEDQIKVCPSCSH 797
M E +++L L V SG + + + ++ L A + + K SCS+
Sbjct: 310 EMINHAEDFYKSLELPYRIVAIVSGALNNAAAKKYDLEAWFPFQGEYKELVSCSN 364
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 489 QLPIILYQISNKYRDELRPKHGLLRAREFSMLD 587
++P + +R+E+ P+ GLLR REF M +
Sbjct: 240 KVPFASAMVGKAFRNEISPRSGLLRVREFLMAE 272
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 29.9 bits (64), Expect = 0.46
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 8/135 (5%)
Frame = +3
Query: 213 TSGFFTLLPLARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWAKTG------RXXXX 374
T G LP R ++L + ++ + G + + P + LW K+G +
Sbjct: 64 TPGSIFFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFR 123
Query: 375 XXXXXXXXDRH-NKKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQISNKYRDELR-PK 548
D H N Y L P + + + SYK+LP+ S +R+E
Sbjct: 124 VEESRNVEDEHSNATYGLKPMNCPGHCIVYASTER-SYKELPLRFADFSPLHRNEASGAL 182
Query: 549 HGLLRAREFSMLDAY 593
GL R R F D +
Sbjct: 183 SGLTRLRCFHQDDGH 197
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 480 SYKQLPIILYQISNKYRDELRPKHGLLRAREFSMLDAYGAHASSACALQVYGRMATAYEH 659
S++ LP+ L Q ++ R E + LR REF + + AH + A + ++ Y
Sbjct: 327 SHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHMTLEGATEEVHQILDLYAR 386
Query: 660 LFRAL 674
++ L
Sbjct: 387 IYTDL 391
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -2
Query: 427 ANRYFLLCLSSRVNSSAAAFSRRPVFAHSPADVRAGNDNLCAPEDSMQVLMRFSSLSSAL 248
AN +S + SA+ S +P + D++ N NLCAPE S R S S+
Sbjct: 430 ANPLLQTDISITYSQSASPVSGQPAMNENSYDLQ--NANLCAPEMSPTYTARHRSNSAGS 487
Query: 247 R 245
R
Sbjct: 488 R 488
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 592 TERTPPQPAPSRSTDGWQPPTSIYSAPYT 678
T R P +P P RST QPP+S AP T
Sbjct: 54 TRRLPRKPLPFRST-SLQPPSSQPPAPPT 81
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 373 LLQSY*PWKIDTTKNICWLRHTKRQSRSYCQTSSRSHTSNYRLYYIRLAIN 525
+L+SY K +T C L+H C SS ++ Y LYY IN
Sbjct: 139 ILRSYEVKKRVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLYYTSFIIN 189
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 469 RSDNNSAIASSYVG--ANRYFLLCLSSRVNSSAAAFS 365
R+D N + +YV ANR +LCL S + ++A F+
Sbjct: 206 RTDGNGSSCCAYVASIANRRLVLCLLSSLINTAMRFN 242
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 352 RLAAWRMLLQSY*PWKIDTTKNICWLRHTKRQSRS 456
+L RM L P +T++NI WL+H+ R S +
Sbjct: 572 QLKTARMKLADKYPQGDNTSENIDWLKHSLRDSNT 606
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 400 IDTTKNICWLRHTKRQSRSYCQTSSRSHTSNYRLYYIRLAINTGTNCGRNTGC 558
+DT + + WL ++RS T++ H+S ++ L +N G+N C
Sbjct: 653 LDTPEQVTWLLDQASKNRSVAATNANEHSSRSHSVFM-LHLN-GSNSTTGETC 703
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 514 LAINTGTNCGRNTGCSGRGSSRCWTRTERTPPQPAPSR 627
LA + N ++ R +SR R + PP+ APS+
Sbjct: 180 LASSNNKNHNQSKNPQNRSNSRSKQRNKNAPPKSAPSK 217
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 429 PTYEEAIAELLSDLKPISYKQLP 497
P Y EAI + L+P Y+QLP
Sbjct: 98 PHYAEAIVPIQQVLQPQQYRQLP 120
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 775 FIWSSPEVAASCHSCEKLPPISPDGASTLCT 683
+ S P + CH+C+ IS D LCT
Sbjct: 78 YFGSDPSESIVCHNCKGNGHISKDCPHVLCT 108
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 468 LKPISYKQLPIILYQISNKYR 530
L P+ + P++L+QI +KY+
Sbjct: 1134 LSPVDFANNPLLLFQIISKYK 1154
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 364 RRPVFAHSPADVRAGNDNLCAPEDSMQVLMRFSSLSSA 251
RR V +SPA +R GN +L + +++ + +LSS+
Sbjct: 43 RRLVDDNSPATIRVGNVSLLLSKSNIRRRIALQALSSS 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,078
Number of Sequences: 5004
Number of extensions: 57654
Number of successful extensions: 182
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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