Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_O14
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 130 1e-30
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 127 8e-30
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 31 1.2
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 30 2.1
U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81512-4|CAB04170.1| 550|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23139-11|AAK31490.1| 328|Caenorhabditis elegans Hypothetical p... 29 4.8
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 130 bits (313), Expect = 1e-30
Identities = 81/229 (35%), Positives = 117/229 (51%), Gaps = 10/229 (4%)
Frame = +2
Query: 113 MACLNPLKLAIKTLXQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHANITETYPTT 292
MACL LK I+ L ++FPKNH RFQI+SASVDEL+ +F+ K + ANI E YP
Sbjct: 1 MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYPRQ 60
Query: 293 PPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGVPEXXXXXXXXXX 469
PP+WF+ES+D P++ ++Q LT T+ N +++QV L+ +LC + +
Sbjct: 61 PPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVSDLCSFYNLQMPCELPQIAPP 119
Query: 470 VHPAPPQHR---VPSVTSNXXXXXXXXXXXXXXXXXXXXXXXXLP-----LEMVEDAGRS 625
V + R + TS +EM E+ S
Sbjct: 120 VRDDIDEGRGSDISDTTSEPIDDDMAGDGEVDDDDEEEEDDEDADGDIEIVEMAEEDPTS 179
Query: 626 NKD-DMETEHLATLERLXQNQRQDYLSGSVSGSLQATDRLMKELRDIYR 769
D + E L L+++ + RQ +L G V GS+ ATDRLMKE+RDI+R
Sbjct: 180 QHDVGVSKEGLDMLDKVSKINRQQHLDGKVQGSITATDRLMKEIRDIHR 228
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 127 bits (307), Expect = 8e-30
Identities = 80/229 (34%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Frame = +2
Query: 113 MACLNPLKLAIKTLXQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHANITETYPTT 292
MACL LK I+ L ++FPKNH RFQI+SASVDEL+ +F+ K + ANI E YP
Sbjct: 1 MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYPRQ 60
Query: 293 PPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGVPEXXXXXXXXXX 469
PP+WF+ES+D P++ ++Q LT T+ N +++QV L+ +LC + +
Sbjct: 61 PPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVSDLCSFYNLQMPCELPQIAPP 119
Query: 470 VHPAPPQHR---VPSVTSNXXXXXXXXXXXXXXXXXXXXXXXXLP-----LEMVEDAGRS 625
V + R + TS +EM E+ S
Sbjct: 120 VRDDIDEGRGSDISDTTSEPIDDDMAGDGEVDDDDEEEEDDEDADGDIEIVEMAEEDPTS 179
Query: 626 NKD-DMETEHLATLERLXQNQRQDYLSGSVSGSLQATDRLMKELRDIYR 769
D + E L L++ + RQ +L G V GS+ A+DRLMKE+RDI+R
Sbjct: 180 QHDVGVSKEGLDMLDKASKINRQQHLDGKVQGSITASDRLMKEIRDIHR 228
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -3
Query: 719 CQTHCRIDSPAFGSVSVALVSLNVQFPCHPCCYGQHLQPSQV 594
CQT C +PA + Q C P C Q QP ++
Sbjct: 659 CQTACATQTPAVQAAPAPSCQPQCQPACEPVCIAQQAQPVRI 700
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 652 MFSFHVILVATASIFNHLKWQVIFSFR-VIFLSCHFLIFLCTRF 524
+FSF ++ VA ++NH++ + + R + + FL F C +F
Sbjct: 36 LFSFIIVCVALPIMYNHVQNTITYVDREMAYCEVRFLYFYCIKF 79
>U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical
protein C48C5.3 protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 292 CGGVCFSYVCVYFIFLSIFAN 230
CG + FS+ C+YF+ L+ N
Sbjct: 275 CGSIIFSWTCLYFVSLNAILN 295
>Z81512-4|CAB04170.1| 550|Caenorhabditis elegans Hypothetical
protein F25C8.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 59 LFTWLAPLSHQNXCSHTLMACLNPLKL-AIKTLXQVFPKNHERFQIMSASVDELTCRFVG 235
L L ++ +N C HT M C+ K+ A+ + + + +++ L G
Sbjct: 242 LLNGLTVVTEKNFCVHTFMTCIQRYKIRAVHLTPYLMNLMMFEAENHTYNIESLEWVVTG 301
Query: 236 KNGKKYEIHANITETYPTTPPV 301
+ E++ TE +P+ V
Sbjct: 302 ADAVTEELYEEFTEIFPSVKTV 323
>U23139-11|AAK31490.1| 328|Caenorhabditis elegans Hypothetical
protein F13H8.9 protein.
Length = 328
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 86 HQNXCSHTLMACLNPLKLAIKTLXQVFPKNHERFQIMSASVDEL 217
H+N CS L AC P +A KT+ F ++ + +I + VDEL
Sbjct: 279 HKNECSPILKACGIPFAVASKTVRISFGRSTKIAEIETV-VDEL 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,311
Number of Sequences: 27780
Number of extensions: 347098
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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