Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_O10
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   2.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.5  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   6.2  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   8.2  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   8.2  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   8.2  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 191 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 280
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 164 FSRNSLPHSCPVCLKCESV 108
           F++N LPHS    LKC  V
Sbjct: 842 FNKNLLPHSLEFILKCSKV 860


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 161 SRNSLPHSCPVCLKCESVG*SSLRFYDSRVGITSKKQKFDFAKSTVRYLKNY 6
           SR      C + LKC+ +        D+RV + +     D    T +YL+ Y
Sbjct: 84  SRQDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRKY 135


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 171 EWFLTKFVTTFLPSLFEMR 115
           +WF TK  +  LPS+F++R
Sbjct: 16  KWFNTKLSSRDLPSVFDLR 34


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 89  NVKMITPLTRISNKLGRN 142
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 68  YLLENRRNVKMITPLTRISNKLGRNVVTN 154
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,590
Number of Sequences: 5004
Number of extensions: 32952
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)