Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_O09
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 171 1e-43
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 28 1.8
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 27 4.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 4.1
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 26 5.5
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.5
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 9.5
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.5
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 9.5
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 171 bits (416), Expect = 1e-43
Identities = 89/152 (58%), Positives = 105/152 (69%), Gaps = 3/152 (1%)
Frame = +3
Query: 165 KAVCVLRG--AVSGTVFFDQQXXKSPV-VVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAG 335
+AV VLRG VSG V F+Q S V V+ V K GFH+H+FGDNTNGCTSAG
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 336 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVH 515
HFNPE + HG ++AVRHVGDLGN+E+ + G K + DS ISL G NSIIGRT+V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121
Query: 516 ADPDDLGLGGNELSKTTGNAGGRIACGVIGLA 611
A DDLG G +E S TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 343 STLKNKIMVVPVLLYAMSAISVTLRQLKTLESLK 444
STLK + + PV L A+ I ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 323 ATVCVVTKFVHMETVFTLSQALDXSRNN-NR*LXXLLIEENSXANST 186
A +C+ + VH++ V +LS+ NN N+ L LLI S ST
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 337 LISTLKNKIMVVPVLLYAMSAISVTLRQLKTLES-LKYQSKIPRSLFM 477
L++T + + +PVLLY + +++ + L++ ES + + KI +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 622 YFHFSYIGLGTTIFSDXXXXXXXXXXXXS--PT*IKNPVSLMVILVYLIVKRCKHNQLXW 795
YFHF++IGL I D + T I P+ ++ + V++ ++ + ++ W
Sbjct: 241 YFHFTWIGLAVFITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHYLNFKIMW 300
Query: 796 *VY 804
V+
Sbjct: 301 AVW 303
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 652 YQAQYMKNESI*ILAKPMTPQAI 584
Y +NES +LAKPMTP +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 381 AVRHVGDLGNIEAIEDAGVTKVSIQDSQ 464
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 322 QPFVLSPNSCTWKPCLPLVKPWTXPETT 239
+PF L+P + + P +KPW P T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 511 TTKVRPMMLLGP*REIWESWIDTLVTP 431
+T + P LL E+WE DT +TP
Sbjct: 78 STLIEPNYLLTAWHELWEELQDTYMTP 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,358
Number of Sequences: 5004
Number of extensions: 57661
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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