Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_O09
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               172   2e-43
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                77   2e-14
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                54   1e-07
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  32   0.47 
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         30   2.5  
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)              28   7.7  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  172 bits (419), Expect = 2e-43
 Identities = 74/127 (58%), Positives = 99/127 (77%)
 Frame = +3

Query: 234 PVVVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNI 413
           P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDLGN+
Sbjct: 27  PCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNV 86

Query: 414 EAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTGNAGGRIAC 593
            A +D G   + + D+ ++L G +S++GR++VVHAD DDLG GG+E SKTTG+AGGR+AC
Sbjct: 87  VAGDD-GKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLAC 145

Query: 594 GVIGLAK 614
           GVIG+ +
Sbjct: 146 GVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +3

Query: 390 HVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTG 569
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GG+ELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 570 NAGGRIACGVI 602
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 33/49 (67%)
 Frame = +3

Query: 363 HGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLV 509
           HG P    RH+GDLGNIEA +  G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 25/93 (26%), Positives = 43/93 (46%)
 Frame = +3

Query: 279 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQD 458
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 459 SQISLHGPNSIIGRTLVVHADPDDLGLGGNELS 557
           +Q SL G  SI+G     H + +  GLG N+ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
 Frame = +3

Query: 120 CSPLNLTSSNLTMPAKAVCVLRGAVSGTVFFDQQXXKSP----VVVSGXVQGLTKGKHGF 287
           C  L  T+ ++             + GTV F Q    +     + ++G  + L+   H  
Sbjct: 42  CVNLRFTACHVNGTTLKATFSMSGIRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDL 101

Query: 288 HVHEFGDNTNGCTSA--GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDAGVTKVS 449
            V   G+    C +   G  ++P+       S+A +    VGDL G    I+   ++ V 
Sbjct: 102 PVIYKGNAATTCNTVALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV- 160

Query: 450 IQDSQISLHGPNSIIGRTLVV 512
             DS + L G + I GRTLV+
Sbjct: 161 FHDSNLPLTGRHGIFGRTLVL 181


>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
          Length = 339

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = +3

Query: 30  QSHLASDSRCASVRGFSCQTCFLIFNLFSSCSPLNLTSSNLTMP 161
           QSH         VR  S Q+C    NL S  SPLNL SS    P
Sbjct: 8   QSHPRHIPTSIHVRHLSTQSCPPPLNLKSCFSPLNLQSSPPPQP 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,783,393
Number of Sequences: 59808
Number of extensions: 450480
Number of successful extensions: 1108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)