Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_O07
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 29 0.49
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 0.85
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 0.85
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.1
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 27 2.0
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 2.0
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 3.4
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 26 4.5
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 6.0
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 25 7.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 7.9
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 7.9
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 29.1 bits (62), Expect = 0.49
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 241 IIVEGPVAAGKTAFAASLA 297
+++ GP+A+GKTA AA++A
Sbjct: 588 VLLSGPIASGKTALAATIA 606
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 28.3 bits (60), Expect = 0.85
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 181 TWLRSLIDRTTHR-FDDNSKVIIVEGPVAAGKTAFAASLADDLGMKH 318
++L+ + + HR F + I V GPV +GKTA L LG K+
Sbjct: 68 SYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKY 114
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 0.85
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 238 VIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLH 345
V +V GP +GKT A ++++ LG ++ E + DLH
Sbjct: 16 VFVVIGPAGSGKTTMAKAVSEKLGFEYI-EGD-DLH 49
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 235 KVIIVEGPVAAGKTAFAASLADDLG 309
+ I++ GP + GKTA A +A LG
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLG 90
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 319 NASYPSHRLGRLQRRSYQQLPALPRLSLCCYHQTCGSCGR 200
NASYP H LQ + + P+L R+ + + T + GR
Sbjct: 73 NASYPDHDFSSLQPTDFYKEPSLSRV-VDSVNSTLNNIGR 111
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 241 IIVEGPVAAGKTAFAASLADDLGM 312
+++ GP GKT A +LA++LG+
Sbjct: 211 VLLHGPPGCGKTMLANALANELGV 234
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 190 RSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLA 297
+S + H D + +++ GP GK++F LA
Sbjct: 749 KSFVPNHIHLSSDGVRCLLITGPNMGGKSSFVKQLA 784
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 235 KVIIVEGPVAAGKTAFAASLADDLGMK 315
K ++ G GKTA A ++A +LG K
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPK 91
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 184 WLRSLIDRTTHRFDDNSKVIIVE 252
WL+ LI + H DNS V +E
Sbjct: 182 WLKKLIQTSLHHSSDNSLVFYLE 204
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 264 SYRPFHDYHFAVIIKPV 214
+Y PF +HFA +KPV
Sbjct: 65 TYNPFPKFHFAGSLKPV 81
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 561 RGPLQHNSLASIEQVXQSINILTVPGHIHHYLEV 460
R LQ +SL + E +++LT ++ H LE+
Sbjct: 429 RSILQEHSLYASESFQHKLDVLTAYSNVTHALEI 462
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 334 MDLHYIRPNGVDLRSFDDQVPEDTRTFDHVNF 429
+D H + P V + D VP D R + VNF
Sbjct: 134 IDSHLLVPGDVVVLKTGDVVPADLRLVETVNF 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,137
Number of Sequences: 5004
Number of extensions: 44810
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -