Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N24
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...   237   1e-63
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   4.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score =  237 bits (580), Expect = 1e-63
 Identities = 115/199 (57%), Positives = 139/199 (69%), Gaps = 1/199 (0%)
 Frame = +2

Query: 218 LDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE 397
           L K  +E D   E +LR NP RFV+FPI+Y +IWQ YKKAEASFWT EE+DLSKDL DW+
Sbjct: 57  LGKKEDELD---EVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD 113

Query: 398 T-LKDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMY 574
             L   ER+FI  VLA+FAASDGIVNENL+ERFS EVQ+ EARC YGFQI +EN+HSE Y
Sbjct: 114 NKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETY 173

Query: 575 SLLIDTYIRDPKERDFLFNAVETLPCVKKKADWALQWIASKTATFGERXXXXXXXXXXXX 754
           SLL+DTYIR+PKE+   F+A+ T+  +K KA WAL+WI  + +T+  R            
Sbjct: 174 SLLLDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWINDEDSTYAIRLVAFAAVEGIFF 233

Query: 755 XXXXXXXXWLXKRGLMPGL 811
                   WL KRGLMPGL
Sbjct: 234 SGSFASIFWLKKRGLMPGL 252


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 548 MENVHSEMYSLLIDTYIRDPKERDF 622
           + N H  +Y LL D Y++ P +R F
Sbjct: 61  LHNKHVSLYCLLSDRYLQPPSKRIF 85


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 161 PMKNSVLATKN-DNLTEEMDLDKNFEEFDPQKEPLL 265
           P  N +L T + D L   +D  K  +  DP+++PLL
Sbjct: 156 PKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLL 191


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 449 AASDGIVNENLVERFSQEVQ 508
           A +DGI+N+N++E   + VQ
Sbjct: 281 AVADGIMNDNVLESIGENVQ 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,583
Number of Sequences: 5004
Number of extensions: 68238
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)