Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N24
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1045 - 8241862-8242881 231 4e-61
06_01_0189 + 1470006-1470989 230 9e-61
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151... 31 1.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.4
05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352 30 2.5
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 29 3.3
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 29 4.4
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803... 29 4.4
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 29 5.8
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328... 28 7.7
>06_01_1045 - 8241862-8242881
Length = 339
Score = 231 bits (566), Expect = 4e-61
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 1/188 (0%)
Frame = +2
Query: 251 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWET-LKDSERHFI 427
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHFI
Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFI 73
Query: 428 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDP 607
HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYIRD
Sbjct: 74 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDG 133
Query: 608 KERDFLFNAVETLPCVKKKADWALQWIASKTATFGERXXXXXXXXXXXXXXXXXXXXWLX 787
E+D LF A++T+P V++KADWA++WI F ER WL
Sbjct: 134 AEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCAIFWLK 192
Query: 788 KRGLMPGL 811
KRGLMPGL
Sbjct: 193 KRGLMPGL 200
>06_01_0189 + 1470006-1470989
Length = 327
Score = 230 bits (563), Expect = 9e-61
Identities = 110/188 (58%), Positives = 130/188 (69%), Gaps = 1/188 (0%)
Frame = +2
Query: 251 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWET-LKDSERHFI 427
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHF+
Sbjct: 2 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFV 61
Query: 428 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDP 607
HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYIRD
Sbjct: 62 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDD 121
Query: 608 KERDFLFNAVETLPCVKKKADWALQWIASKTATFGERXXXXXXXXXXXXXXXXXXXXWLX 787
E+D LF A++T+P V++KADWA++WI F ER WL
Sbjct: 122 VEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSGSFCAIFWLK 180
Query: 788 KRGLMPGL 811
KRGLMPGL
Sbjct: 181 KRGLMPGL 188
>06_03_0107 +
16709543-16709640,16712555-16713408,16715051-16715193,
16715312-16715573,16715835-16716150,16716257-16716383,
16717088-16717149,16717291-16717374,16717438-16717494,
16717705-16717768,16718057-16718152
Length = 720
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 113 NLHSGINGENRVQTKSPMKNSVLATKNDNLTEEM-DLDKNFEEFDPQKEPLLRENPRRFV 289
++H R+ + P +N+V+ T++D+L E + D + + + E RENP
Sbjct: 45 DIHHTDPSVERLPVQLPFENNVIFTEDDDLEEVIEDPNSSTTKLTAWLEAN-RENPSARQ 103
Query: 290 IFPIQYPDIWQMYKKAEASFW 352
+ I+YP+ W + + +W
Sbjct: 104 LTYIEYPEHWTWHN--QGKYW 122
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -2
Query: 533 HRNILPQ*LELLVKISQPSFHLQCHLKPQRKQGHA**NVSHYLLKSPSLINPWTNRLPRR 354
H ++ P L + +SQ SF + P H + H+ L PSLI PW RL +
Sbjct: 795 HPSLRP--LRTVSSLSQSSFEEYLDISPPSPTFHEK-HQQHFNLDPPSLIPPWQLRLAKT 851
Query: 353 SKTKLQLSCTFA 318
+ ++ CT +
Sbjct: 852 KENEI-YPCTLS 862
>05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352
Length = 236
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 721 NPFTKC-CSLACNPL*SPICFLLYTGKSLNRIKQKISLLRISDVCIYKQGIHFRMNIFHG 545
NPF KC C+ + N L I L Y G SL Q+ S CI+ G+ RM + +G
Sbjct: 85 NPFIKCDCTFSNNTL-CHITRLNYAGTSLLAGHQRESQTPAHFNCIHVVGLEERMRVKNG 143
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = -3
Query: 331 LVHLPYIGVLNREDDKAPRVLTQQRFLLWVEL-----FEIFIEVHFLSQIVIFRSQYTI 170
L+HL Y+G+++ K PR + +FL ++L E+ EV L+Q+V R+ + I
Sbjct: 769 LLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEI 827
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 213 ISSVKLSFFVANTLFFMGDFVCTRFSPLIP 124
IS+ LS VA +L+ + F+CTR+ L P
Sbjct: 342 ISTTMLSCIVARSLYGLVSFLCTRYRGLTP 371
>03_02_0389 -
8036575-8036841,8037011-8037133,8037516-8037736,
8037788-8037812,8038344-8038445,8038556-8038951,
8039647-8039699,8039813-8039897,8040220-8040370,
8040457-8040464
Length = 476
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 687 IHCRAQSAFFFTQGRVSTALNRKSLSFGSLMYVSISREYIS 565
+H AQSA QG++ + + + +GS Y S E +S
Sbjct: 188 LHAIAQSAHCIAQGKIGSGFDVSAAVYGSQRYTRFSPEILS 228
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +2
Query: 104 DKENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDK----NFEEFDPQKE 256
D N S GE S KN +K + EEMDLDK EE DP+ E
Sbjct: 448 DMTNAVSEDGGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKVAAEETDPENE 502
>07_01_0431 +
3283252-3283274,3283684-3283819,3285839-3286682,
3286785-3286856,3286906-3286937,3287020-3287433
Length = 506
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 539 QIAMENVHS-EMYSLLIDTYIRDPKERDFLFNAVETLP 649
+I +E+V E+Y ++ D ++++PK D L + LP
Sbjct: 27 EILLEDVKKREIYEIMEDHWVQEPKAMDILNRIISLLP 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,488
Number of Sequences: 37544
Number of extensions: 401740
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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