Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N23
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    25   0.87 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   2.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   2.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   8.1  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 17  WSIGKMAPARSALGFLNSXTFNSLLTNT---IPKTTY 118
           W      PAR ALG     T  +L+++T   +PK +Y
Sbjct: 90  WLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY 126


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 122 FLHKCNNCERFVGSHAISDTSFKTYNFPK 208
           FL+      +FV    + D +F +Y +PK
Sbjct: 102 FLNLAKRWPKFVKDWCVVDATFASYGWPK 130


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 122 FLHKCNNCERFVGSHAISDTSFKTYNFPK 208
           FL+      +FV    + D +F +Y +PK
Sbjct: 102 FLNLAKRWPKFVKDWCVVDATFASYGWPK 130


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 329 KYHPDANKSDPE 364
           +Y+PD  K DPE
Sbjct: 401 EYYPDPEKYDPE 412


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,153
Number of Sequences: 336
Number of extensions: 3547
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)