Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N15
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 71 2e-13
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 53 3e-08
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 48 1e-06
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 43 4e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 1.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 1.7
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 4.0
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 5.2
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 5.2
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 6.9
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.1
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 70.5 bits (165), Expect = 2e-13
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +1
Query: 304 FGTSSPFDQDVERATSENNT--SEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPH 477
+ ++S F D+E+ATSE SEE L +EI D+ + S K +R + R+ H +P+
Sbjct: 5 WNSNSQFASDIEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHSNPN 64
Query: 478 VQVHAATLLDACVANXGRXFHLEVASRDF 564
VQ+ A L D CV N G F LE+ASR+F
Sbjct: 65 VQIMALKLTDTCVKNGGSGFLLEIASREF 93
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +1
Query: 307 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTS-AKECLRAVMRRLAHPDPHVQ 483
G + + + +AT E NT E+W +IM+ CD+ ++S + ++ + +RL + ++Q
Sbjct: 4 GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQ 63
Query: 484 VHAATLLDACVANXGRXFHLEVASRDFETEFRRLLS 591
+ A TL DA V N E++SR F ++ S
Sbjct: 64 LLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIAS 99
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 310 TSSPFDQDVERATSENNTSEEWGLIMEICDRAGASS-TSAKECLRAVMRRLAHPDPHVQV 486
+S + +++AT + N L +EI D + +E +++R+ +P V
Sbjct: 3 SSQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSY 62
Query: 487 HAATLLDACVANXGRXFHLEVASRDFETEF 576
A LLD CV N G FH ++AS +F F
Sbjct: 63 LALHLLDICVKNCGYPFHFQIASEEFLNGF 92
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 334 VERATSENNTSEEWGLIMEICDRAGASSTSA-KECLRAVMRRLAHPDPHVQVHAATLLDA 510
++ AT + + ++I D + + +E A++R++ +P V A LLD
Sbjct: 12 IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDI 71
Query: 511 CVANXGRXFHLEVASRDFETEFRRLLSRAQP 603
CV N G F L++AS++F E R P
Sbjct: 72 CVKNCGYAFRLQIASKEFLNELVRRFPERPP 102
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 448 MRRLAHPDPHVQVHAATLLDACVANXGRXFHLEVASRDFETEFRRLLSRAQPPVAA 615
++RL+ DP V + + VA G HLE+ +D + + + + PPV +
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGE-LHLEICLKDLQEDHAGIPLKISPPVVS 562
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 448 MRRLAHPDPHVQVHAATLLDACVANXGRXFHLEVASRDFETEFRRLLSRAQPPVAA 615
++RL+ DP V + + VA G HLE+ +D + + + + PPV +
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGE-LHLEICLKDLQEDHAGIPLKISPPVVS 562
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 PHCSTPALQXVVVSSTWKSPRET---SRPSSGACCLARSLLSPLVS 622
P CSTP++ VS+T + ET S +S + RS LS L+S
Sbjct: 281 PRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSLSKLLS 326
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 353 SLVARSTS*SKGEEVPNIPILLTKKHLLDYMLLIKIL 243
SL+A + S ++ ++ + LT++ L DY +IKIL
Sbjct: 318 SLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 443 ARRHSFALVEDAPARSHISMISPHSSLVLFSLV 345
AR+HSFA E+ A IS+ + HS V F V
Sbjct: 502 ARKHSFAEDEEREAPEDISLHNTHSD-VTFDFV 533
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 304 FGTSSPFDQDVERATSENNTSEEWGLIMEI 393
FG++ P D++ + T+ +NTS + L +I
Sbjct: 331 FGSTEPIDEEEKSKTASDNTSLQTSLFGKI 360
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 464 IPTHTYRFTPPHCSTPALQXVVVSSTWKSPRETSRPSSGAC 586
I TH +++ H TP + +SS+ SP + + S C
Sbjct: 146 ISTHLAKYSIHHMGTPPSKPSFLSSSVSSPASSKQKSLFQC 186
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 286 VNKMGIFGTSSPFDQDVERATSENNTSEEWGLIMEICD 399
+N++ ++ D D++ SEN SE+WGL ++C+
Sbjct: 1082 INQLSLYIFEMFMDDDLK--LSEN--SEDWGLFSKLCN 1115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,959
Number of Sequences: 5004
Number of extensions: 43716
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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