Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N15
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    68   6e-12
U97407-8|AAN84851.1|  397|Caenorhabditis elegans Prion-like-(q/n...    62   3e-10
U97407-7|AAB52480.2|  457|Caenorhabditis elegans Prion-like-(q/n...    62   3e-10
U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical pr...    54   9e-08
U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical pr...    54   9e-08
AF003385-3|AAB54248.2|  228|Caenorhabditis elegans Hypothetical ...    31   0.69 
U80448-2|AAB37816.1|  321|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 31/93 (33%), Positives = 51/93 (54%)
 Frame = +1

Query: 313 SSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHA 492
           ++ F + +++AT        W  I+   D   +    AK  L+A+ +R+ H +PHV  H 
Sbjct: 2   ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRMQHENPHVVNHT 61

Query: 493 ATLLDACVANXGRXFHLEVASRDFETEFRRLLS 591
             +LDACV N G   H EVA+R+F  +F+ L++
Sbjct: 62  LLVLDACVKNCGHKVHAEVATREFMEDFKNLVT 94


>U97407-8|AAN84851.1|  397|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform b protein.
          Length = 397

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 32/103 (31%), Positives = 55/103 (53%)
 Frame = +1

Query: 316 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 495
           S ++  + + T+   T E W  I+  CD        +K  ++++ +RL + DPHV + A 
Sbjct: 2   SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 61

Query: 496 TLLDACVANXGRXFHLEVASRDFETEFRRLLSRAQPPVAARLR 624
           ++LD+C AN    F  EV+S  F  E + L + +Q  VA ++R
Sbjct: 62  SVLDSCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEKMR 104


>U97407-7|AAB52480.2|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform a protein.
          Length = 457

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 32/103 (31%), Positives = 55/103 (53%)
 Frame = +1

Query: 316 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 495
           S ++  + + T+   T E W  I+  CD        +K  ++++ +RL + DPHV + A 
Sbjct: 10  SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 69

Query: 496 TLLDACVANXGRXFHLEVASRDFETEFRRLLSRAQPPVAARLR 624
           ++LD+C AN    F  EV+S  F  E + L + +Q  VA ++R
Sbjct: 70  SVLDSCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEKMR 112


>U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical
           protein C07A12.7a protein.
          Length = 437

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
 Frame = +1

Query: 313 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 480
           ++P  + +E AT  N   +E WGL MEICD    +    ++ +RA+ +RL +    +  V
Sbjct: 36  ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95

Query: 481 QVHAATLLDACVANXGRXFHLEVASRDFETEFRRLL 588
            ++  T+L+  V N    FH+ V ++DF  +  +L+
Sbjct: 96  VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLI 131


>U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical
           protein C07A12.7b protein.
          Length = 403

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
 Frame = +1

Query: 313 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 480
           ++P  + +E AT  N   +E WGL MEICD    +    ++ +RA+ +RL +    +  V
Sbjct: 36  ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95

Query: 481 QVHAATLLDACVANXGRXFHLEVASRDFETEFRRLL 588
            ++  T+L+  V N    FH+ V ++DF  +  +L+
Sbjct: 96  VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLI 131


>AF003385-3|AAB54248.2|  228|Caenorhabditis elegans Hypothetical
           protein R08F11.6 protein.
          Length = 228

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +2

Query: 161 LXLKFFIKQEIFV*SILFHSDFSIKNYLIFLSITYNQVDVFLLTKWGYLALP 316
           L  KF + Q + V  I  +S  S+ + LIFLS+TYNQ       + GY +LP
Sbjct: 90  LLTKFGMHQTLIVFGI--YSMLSLFSKLIFLSLTYNQNVSLQNRQEGYCSLP 139


>U80448-2|AAB37816.1|  321|Caenorhabditis elegans Hypothetical
           protein F59A3.4 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 484 VHAA-TLLDACVANXGRXFHLEVASRDFETEFRRLLSRAQPPVAARLRAL 630
           VH A TLL +CV + G    L   +R  ETE   + +R    VAA  R++
Sbjct: 90  VHLADTLLPSCVGDAGMTSLLSPPTRRSETEMSLMQAREDLDVAALARSV 139


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 251 LSITYNQVDVFLLTKWGYLALPRLLIKMLNAQRVKITPARS 373
           L ++YNQ+  F ++ W +   P+L    L++ R++  P+ S
Sbjct: 296 LDLSYNQIQSFHISSWSH--TPKLKWLSLHSNRIQSLPSGS 334


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 251 LSITYNQVDVFLLTKWGYLALPRLLIKMLNAQRVKITPARS 373
           L ++YNQ+  F ++ W +   P+L    L++ R++  P+ S
Sbjct: 296 LDLSYNQIQSFHISSWSH--TPKLKWLSLHSNRIQSLPSGS 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,914
Number of Sequences: 27780
Number of extensions: 252165
Number of successful extensions: 691
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)