Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N14
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    68   7e-13
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    55   4e-09
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    31   0.094
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   3.5  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   6.1  

>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 67.7 bits (158), Expect = 7e-13
 Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +3

Query: 108 EVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQ-KTLT 269
           E+ D S GCG  F V+IVS  F+GK  LARHRLVN  LQE +K IHAFTQ +TL+
Sbjct: 21  EIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFTQVRTLS 75


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 55.2 bits (127), Expect = 4e-09
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +3

Query: 111 VTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLTVD 275
           V D S GCG+ + V I S  F+GK  LA+HRLVN++L+EE++ +H     T   D
Sbjct: 51  VIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNLSTEVED 105


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 30.7 bits (66), Expect = 0.094
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 144 FSVLIVSDKFKGKPLLARHRLVNTLLQEE 230
           F + IVS +F G   +ARHRLV  LL++E
Sbjct: 54  FRLEIVSPEFSGMSRVARHRLVYGLLKDE 82


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -1

Query: 257 LGERVDCLQFLLKQCVHQSMPGKKRFPFELVRYYEN------RKLGAASVALICHLLNRA 96
           L + +D +   L   VH   P  +  P  +VR +++      R L   S  LIC  +++ 
Sbjct: 620 LADNIDIVTIFLS-LVHPPSPAGELHP--IVRLFQDIWPILSRTLDTFSDVLICERISKL 676

Query: 95  LSNFLNT 75
           L NF+ T
Sbjct: 677 LKNFIYT 683


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 105 EEVTDESDGCGAKFSVLIVSDKFKGKP 185
           EE+      CG+   V I+ DKF G P
Sbjct: 69  EELQSHFASCGSVNRVTILCDKFTGHP 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,548
Number of Sequences: 5004
Number of extensions: 22589
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)