Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N12
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    57   8e-11
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   1.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.0  

>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 57.2 bits (132), Expect = 8e-11
 Identities = 31/77 (40%), Positives = 43/77 (55%)
 Frame = +1

Query: 226 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFE 405
           G+ +  +R + +P V   +  H+ P       S      K  K P KRK++RF TRV+ +
Sbjct: 19  GRGQNTQRVQNQPLVIGCDEKHVSPHVIGGITSGGPIPTKSSKYPIKRKRVRFQTRVKVQ 78

Query: 406 ERYKSGKNKWFFQKLRF 456
           E  KSG+NKWFFQK RF
Sbjct: 79  EGSKSGRNKWFFQKGRF 95


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +2

Query: 56  GQNHAAGSSRCWSSVAGXRVARLSXSSIXPQ----VPPTSHTGMPSSLVSTGTPGKCTRG 223
           G+    G +    S+   +++ +  S   P     +P T H GM  SL    +PG C  G
Sbjct: 337 GEVDGLGENMMDMSLTRHQISSMGHSHAHPMHHDMLPETMHMGMGPSLTPLASPG-CGPG 395

Query: 224 WERIKST 244
              ++ T
Sbjct: 396 QGGLQPT 402


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +2

Query: 56  GQNHAAGSSRCWSSVAGXRVARLSXSSIXPQ----VPPTSHTGMPSSLVSTGTPGKCTRG 223
           G+    G +    S+   +++ +  S   P     +P T H GM  SL    +PG C  G
Sbjct: 337 GEVDGLGENMMDMSLTRHQISSMGHSHAHPMHHDMLPETMHMGMGPSLTPLASPG-CGPG 395

Query: 224 WERIKST 244
              ++ T
Sbjct: 396 QGGLQPT 402


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 259 KPFVKVVNYNHLMPTRY 309
           K F  +VN  HL+ T+Y
Sbjct: 83  KNFTNIVNLTHLLETQY 99


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 146 QVPPTSHTGMPSSLVSTGTPGKC 214
           Q PPT   G+P  +V      +C
Sbjct: 438 QAPPTYDYGIPQGVVLNPLDARC 460


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,429
Number of Sequences: 336
Number of extensions: 2050
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)