Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N12
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 134 7e-33
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 130 2e-31
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.059
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.96
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 27 2.2
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 5.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 9.0
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 9.0
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 134 bits (324), Expect = 7e-33
Identities = 61/128 (47%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K L+ GR AG+K ++++ G P+GHA VAG++RYP KV K MG +I +RS++
Sbjct: 9 KVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRV 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 432
KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE+Y+SGK+
Sbjct: 69 KPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSA 128
Query: 433 WFFQKLRF 456
WFF LRF
Sbjct: 129 WFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 130 bits (313), Expect = 2e-31
Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K LV GR AG+K +++++ G P+GHA VAG++RYP KV K MG +I KRS++
Sbjct: 9 KVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRV 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 432
KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE+Y++GK+
Sbjct: 69 KPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSA 128
Query: 433 WFFQKLRF 456
WFF LRF
Sbjct: 129 WFFTPLRF 136
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 31.9 bits (69), Expect = 0.059
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 17 SLVNASRASPSKSGQNHAAGSSRCWSSVAGXRVARLSXSSI--XPQVPPTSHTGMPSSLV 190
+L ++S ASP+ S +HA SS S VA + +S SS+ VP +S + SS+
Sbjct: 105 TLTSSSSASPTSSSSSHALSSSSS-SLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMT 163
Query: 191 STG 199
++G
Sbjct: 164 TSG 166
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.96
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 226 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 360
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 423 EEQVVLPEA*VLSVILKENKRYVSNEKKKKKK 518
E QVV+ + + ILKE ++Y+ N KK KK
Sbjct: 250 ENQVVVNDYRQMDKILKEERQYLLNMCKKIKK 281
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 319 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 453
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 357 VFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 256
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 5.1
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 26 NASRASPSKSGQNHAAGSSRCWSSVAGXRVARLSXSSIXPQVPPTSHTGMPSSLVSTGTP 205
++S +S SKS + + SSR S R SS P V P +T + ++ T
Sbjct: 152 SSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFP--YTTISHYNITNATN 209
Query: 206 GKCTRG 223
G G
Sbjct: 210 GTYCNG 215
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 208 KVHKRMGKNKIHKRSKIKPFVKVV 279
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 313 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 429
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 313 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 411
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 330 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 223
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 411 PLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFI 232
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 231 LSHP 220
P
Sbjct: 806 SDLP 809
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 256 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 393
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,261
Number of Sequences: 5004
Number of extensions: 34073
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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