Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N12
(520 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27 pro... 174 1e-43
L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27 pro... 174 1e-43
BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27 p... 174 1e-43
BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27 p... 174 1e-43
BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27 p... 174 1e-43
BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27 p... 174 1e-43
BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27 p... 174 1e-43
AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27 p... 174 1e-43
BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein. 173 4e-43
U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27 pro... 60 3e-09
AK131238-1|BAD18420.1| 715|Homo sapiens protein ( Homo sapiens ... 29 9.8
>L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 174 bits (424), Expect = 1e-43
Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Frame = +1
Query: 79 KSLLVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 258
K +LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKI
Sbjct: 9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI 68
Query: 259 KPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNK 432
K FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNK
Sbjct: 69 KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK 128
Query: 433 WFFQKLRF 456
WFFQKLRF
Sbjct: 129 WFFQKLRF 136
>BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein.
Length = 140
Score = 173 bits (420), Expect = 4e-43
Identities = 83/125 (66%), Positives = 98/125 (78%), Gaps = 2/125 (1%)
Frame = +1
Query: 88 LVLSGRXAGRKALVVKHXAAGXSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 267
LVL+GR +GRKA++VK+ G SD+PY HA VAGIDRYPRKV MGK KI KRSKIK F
Sbjct: 16 LVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSF 75
Query: 268 VKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFF 441
VKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNKWFF
Sbjct: 76 VKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFF 135
Query: 442 QKLRF 456
QKLRF
Sbjct: 136 QKLRF 140
>U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27
protein.
Length = 40
Score = 60.5 bits (140), Expect = 3e-09
Identities = 26/39 (66%), Positives = 33/39 (84%), Gaps = 1/39 (2%)
Frame = +1
Query: 343 KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 456
KD+ +DPA ++K R +V+FEERYK+GKNKWFFQKLRF
Sbjct: 2 KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 40
>AK131238-1|BAD18420.1| 715|Homo sapiens protein ( Homo sapiens
cDNA FLJ16151 fis, clone BRAMY2045471, weakly similar
to Homo sapiens CGI-89 protein mRNA. ).
Length = 715
Score = 29.1 bits (62), Expect = 9.8
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Frame = +2
Query: 17 SLVNASRASPSKSGQNHAAGSSR--CWSSVAGXRVARLSXSSIXPQVPPTSHTGMP---- 178
S + A +AS + G ++GS R + S S P+ HT +P
Sbjct: 581 SSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPGTPHSPSYAGPKAVAFIHTDLPEPPP 640
Query: 179 SSLVSTGTPGKCTRGWER 232
S V G G CTRGW R
Sbjct: 641 SLTVQRGRIGTCTRGWGR 658
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,862,649
Number of Sequences: 237096
Number of extensions: 1290092
Number of successful extensions: 7868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7840
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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