Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N09
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.37 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.37 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 392 LQQWHCHWGALNGEGSEHTVDG 457
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 392 LQQWHCHWGALNGEGSEHTVDG 457
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 684 QPRQLTGRTQGL*QHHRARSR*FGSSSKNPY 776
           Q +QL   TQ   QH+   +    +SS +PY
Sbjct: 114 QQQQLAAETQQQQQHNNGYASPMSTSSYDPY 144


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 272 WRYSVNHPR 298
           W Y++NHPR
Sbjct: 334 WIYAINHPR 342


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 272 WRYSVNHPR 298
           W Y++NHPR
Sbjct: 334 WIYAINHPR 342


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 SPVDIVTSRVKSGASLPPLKWRYSVN 289
           S + + T   KS ASLPP+ +  +V+
Sbjct: 283 SLLTLSTQHAKSQASLPPVSYLKAVD 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,539
Number of Sequences: 438
Number of extensions: 6107
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)