Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N08
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0) 141 5e-34
SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 40 0.002
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 34 0.10
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_58317| Best HMM Match : rve (HMM E-Value=0.00053) 30 1.7
SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41) 29 3.9
SB_26652| Best HMM Match : HSBP1 (HMM E-Value=0.28) 29 3.9
SB_22142| Best HMM Match : Exo_endo_phos (HMM E-Value=0.25) 29 3.9
SB_13719| Best HMM Match : HSBP1 (HMM E-Value=0.28) 29 3.9
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 5.2
SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37) 28 6.9
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28) 28 9.1
>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
Length = 141
Score = 141 bits (342), Expect = 5e-34
Identities = 65/144 (45%), Positives = 100/144 (69%)
Frame = +2
Query: 158 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKR 337
++F+L+ +R GK RL KWY+ D K+K+ E+ V R K +F+E+++ K+VY+R
Sbjct: 1 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIVYRR 60
Query: 338 YASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 517
YA LYFC ++ DN L LE IH +VE+L+++F +VCELD++FNF K Y ++DE+ L G
Sbjct: 61 YAGLYFCFCVDVSDNNLYYLEAIHNFVEVLNEFFHNVCELDLVFNFYKVYSVVDEMFLAG 120
Query: 518 ELQETSKKNVLKAIAAQDLLQEEE 589
EL+ETS+ VLK + ++LQ+ E
Sbjct: 121 ELRETSQSKVLKQL---NMLQQLE 141
>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 97.1 bits (231), Expect = 1e-20
Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Frame = +2
Query: 233 LKKKITRELITTVLARKPKMCSFLEW------KDVKVVYKRYASLYFCCAMEQEDNELLT 394
++++I +E V R +C+FLE D K+VY+ YA+LYF ++ ++EL
Sbjct: 1 MQQQIIKETFHLVSRRDDNVCNFLEGGSLIGGADFKLVYRHYATLYFVFCVDSSESELGI 60
Query: 395 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDL 574
L+LI +VE LDK F +VCELD+IF+ +K + IL E+V+GG + ET+ +L I AQ+
Sbjct: 61 LDLIQVFVETLDKCFENVCELDLIFHMDKVHHILAEIVMGGMVLETNMSEILTHIEAQNK 120
Query: 575 LQEEE 589
L++ E
Sbjct: 121 LEKSE 125
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +2
Query: 335 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 514
R +++ Q N + E + R V+++ YFG V E I NF Y +LDE+
Sbjct: 59 RQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIYELLDEIADY 118
Query: 515 GELQETSKKNVLKAIAAQ 568
G Q+T +LK Q
Sbjct: 119 GYPQKTDTA-ILKTFITQ 135
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +2
Query: 359 CAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSK 538
C ++ N L +HR V + YF + E I NF Y ++DELV G Q T
Sbjct: 14 CTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFTET 73
Query: 539 KNVLKAIAAQDLLQEEETPQ 598
K +L+ Q+ + E P+
Sbjct: 74 K-ILQEYITQEGHKLELAPK 92
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 287 KMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDII 466
K +F+E + V+ VY+ LY + N L LE + + ++ +Y ++ E +I
Sbjct: 515 KQHTFVETESVRYVYQPLEKLYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIG 574
Query: 467 FNFEKAYFILDELVLGG 517
+ + F DE+V G
Sbjct: 575 EHAFELIFAFDEIVALG 591
>SB_58317| Best HMM Match : rve (HMM E-Value=0.00053)
Length = 1002
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 651 RRTDGAAAYPRPWSSKKPCGVSSSCRRSWAAMAFR---TFF 538
+RTD YP P + K+PC + C R A A++ TFF
Sbjct: 34 QRTDDQNPYPYPGAGKRPCS-DAGCHRHSMAAAYQNGTTFF 73
>SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)
Length = 687
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 642 DGAAAYPRPWSSKKPCGVSSSCRRSWAAMAFR 547
DG+ Y PWS KPC S W +AFR
Sbjct: 397 DGSFYYFLPWSDSKPC---CSVESHWEDIAFR 425
>SB_26652| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 335
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 476 EKAYFILDELVLGGELQETSKKNVL 550
++AYFILD L++ + Q+ ++ NVL
Sbjct: 234 KRAYFILDRLIIRDQKQDAAEANVL 258
>SB_22142| Best HMM Match : Exo_endo_phos (HMM E-Value=0.25)
Length = 413
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 476 EKAYFILDELVLGGELQETSKKNVL 550
++AYFILD L++ + Q+ ++ NVL
Sbjct: 119 KRAYFILDRLIIRDQKQDAAEANVL 143
>SB_13719| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 335
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 476 EKAYFILDELVLGGELQETSKKNVL 550
++AYFILD L++ + Q+ ++ NVL
Sbjct: 234 KRAYFILDRLIIRDQKQDAAEANVL 258
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 529 NQ*EECPESHRCPGSSAGGGDTAG 600
+Q +ECPE++ C S+AG D G
Sbjct: 2825 HQCDECPEAYFCDNSAAGVSDLTG 2848
>SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
Length = 366
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 435 ILAVFVNWTSSLTLRKLTSYLMNWFLV 515
+LA F+ W + L +++MNW+L+
Sbjct: 259 LLAYFICWIPVFAIEALQTFIMNWWLL 285
>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 185 QGKLRLQKWYVAHPDKLKKKITRELI 262
+GK +L W V+H +L++ + REL+
Sbjct: 626 EGKHKLVSWMVSHCGELRETVVRELL 651
>SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 230 KLKKKITRELITTVLARKPKMCSFLEWKDVKVVY 331
++ K +TR L+ T ++R P++ + WK + Y
Sbjct: 446 EVDKNLTRHLVMTWISRYPRVDPSVSWKKARPTY 479
>SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 565
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 476 EKAYFILDELVLGGELQETSKKNV 547
++AYFILD L++ + Q+ +++N+
Sbjct: 234 KRAYFILDRLIIRDQKQDAAEENI 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,355,876
Number of Sequences: 59808
Number of extensions: 393589
Number of successful extensions: 1062
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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