Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N08
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 297 7e-81
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 141 5e-34
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 113 1e-25
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 47 2e-05
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 45 6e-05
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 44 9e-05
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 44 1e-04
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 44 1e-04
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 40 0.002
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 32 0.37
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 30 1.5
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z70035-13|CAA93874.1| 432|Caenorhabditis elegans Hypothetical p... 29 3.4
Z47745-6|CAA87667.1| 432|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 7.9
AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical ... 28 7.9
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 7.9
AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical ... 28 7.9
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 7.9
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 297 bits (728), Expect = 7e-81
Identities = 136/156 (87%), Positives = 148/156 (94%)
Frame = +2
Query: 158 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKR 337
MQ+MLLFSRQGKLRLQKWY A+PDK KKKI RELIT +LARKPKMC+FLE+KD+KVVYKR
Sbjct: 2 MQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYKR 61
Query: 338 YASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 517
YASLYFCCA+EQ DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE +L G
Sbjct: 62 YASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAG 121
Query: 518 ELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG 625
E+QETSKK VLKAIAAQDL+QEEETPQGFFEDHGLG
Sbjct: 122 EIQETSKKQVLKAIAAQDLIQEEETPQGFFEDHGLG 157
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 141 bits (341), Expect = 5e-34
Identities = 62/134 (46%), Positives = 94/134 (70%)
Frame = +2
Query: 158 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKR 337
++F+L+ +R GK RL KWY+ D K+K+ E+ V R K +F+E+++ K+VY+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYRR 61
Query: 338 YASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 517
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 518 ELQETSKKNVLKAI 559
E++ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 113 bits (272), Expect = 1e-25
Identities = 55/147 (37%), Positives = 94/147 (63%), Gaps = 6/147 (4%)
Frame = +2
Query: 167 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEW------KDVKVV 328
+L+ + GK RL K+Y +P++ +++I RE V R +C+FLE D +++
Sbjct: 5 ILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGNDYRLI 64
Query: 329 YKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELV 508
Y+ YA+LYF ++ ++EL L+LI +VE LD+ F +VCELD+IF+ ++ + IL E+V
Sbjct: 65 YRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHILGEIV 124
Query: 509 LGGELQETSKKNVLKAIAAQDLLQEEE 589
+GG + ET+ +L+ I QD +Q++E
Sbjct: 125 MGGMVLETNMNEILQRIQEQDKIQKQE 151
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/143 (19%), Positives = 61/143 (42%)
Frame = +2
Query: 167 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKRYAS 346
+ +++ +G++ + + Y D + + + + AR+ + + +
Sbjct: 5 LFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKRGN 62
Query: 347 LYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQ 526
++ C Q N + E + R+ + + YFG + E ++ NF Y +LDE++ G Q
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 527 ETSKKNVLKAIAAQDLLQEEETP 595
T VLK Q ++ + P
Sbjct: 123 NTD-PGVLKTFITQQGVRTADAP 144
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/134 (20%), Positives = 57/134 (42%)
Frame = +2
Query: 167 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKRYAS 346
+ +++ +G++ + + Y D + + + + AR+ + + +
Sbjct: 5 LFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKRGN 62
Query: 347 LYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQ 526
++ C Q N + E + R+ + + YFG + E ++ NF Y +LDE++ G Q
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 527 ETSKKNVLKAIAAQ 568
T VLK Q
Sbjct: 123 NTD-PGVLKTFITQ 135
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/143 (18%), Positives = 60/143 (41%)
Frame = +2
Query: 167 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKRYAS 346
+ +++ +G++ + + Y D + + + + AR+ + + +
Sbjct: 5 LFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKRGN 62
Query: 347 LYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQ 526
++ C Q N + + R+ + + YFG + E ++ NF Y +LDE++ G Q
Sbjct: 63 VWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 527 ETSKKNVLKAIAAQDLLQEEETP 595
T VLK Q ++ + P
Sbjct: 123 NTD-PGVLKTFITQQGVRTADAP 144
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +2
Query: 302 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEK 481
L ++D V+ ++ ++Y A N + L +++ VE+ +YF V E + NF
Sbjct: 50 LTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVV 109
Query: 482 AYFILDELVLGGELQETSKKNVLKAIAAQD 571
Y +LDE++ G +T++ +L+ Q+
Sbjct: 110 IYELLDEMMDFG-FPQTTESRILQEYITQE 138
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +2
Query: 302 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEK 481
L ++D V+ ++ ++Y A N + L +++ VE+ +YF V E + NF
Sbjct: 50 LTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVV 109
Query: 482 AYFILDELVLGGELQETSKKNVLKAIAAQD 571
Y +LDE++ G +T++ +L+ Q+
Sbjct: 110 IYELLDEMMDFG-FPQTTESRILQEYITQE 138
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +2
Query: 317 VKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 496
+ Y +Y ++Y ++ N +L L +++ VE+ +YF ++ E + NF Y +
Sbjct: 55 ISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELF 114
Query: 497 DELVLGGELQETSKKNVLKAIAAQ 568
DE++ G Q T K + + I Q
Sbjct: 115 DEMLDFGYPQTTESKILQEFITQQ 138
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 165 LCYYLAVKAN*GFRSGTWLIQ-IS*RRK*LEN*LPQ-C*LENPKCVLSLNGKMLKLCIKD 338
+C L A R W +Q ++ ++ L L + C E +C LS K+ +LC D
Sbjct: 430 ICNNLYTPALRDLRGVAWCVQLVATKQDVLAKRLEEICDRERLRCDLSTLRKLCELCAND 489
Query: 339 MHHYISAVLW 368
M H I+ + W
Sbjct: 490 MRHSINTLQW 499
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +2
Query: 344 SLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 517
+L+ + E L+ +E +HR ++ +YF + + N + +LDE++ G
Sbjct: 63 NLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNG 120
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
F31C3.3 protein.
Length = 2029
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 506 VLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAPSVLRSG 658
+L G+L +S+K V +A+ D E ET + +ED GL A ++SG
Sbjct: 971 LLHGKLLWSSEKLVTTMLASTDPYNETETVEMLWEDFGLDWALGEIRIKSG 1021
>Z70035-13|CAA93874.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.11 protein.
Length = 432
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 419 ELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEET 592
E D YF + +L F +K Y+IL ++ L KK + K I + D + T
Sbjct: 190 EYRDAYFAFINQLRKTFEAKKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYST 247
>Z47745-6|CAA87667.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.11 protein.
Length = 432
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 419 ELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEET 592
E D YF + +L F +K Y+IL ++ L KK + K I + D + T
Sbjct: 190 EYRDAYFAFINQLRKTFEAKKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYST 247
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 494 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 640
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical
protein K01A11.5 protein.
Length = 626
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 443 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 595
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 106 SMANTEKFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 153
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 494 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 640
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical
protein Y43F4B.2 protein.
Length = 629
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 443 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 595
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 106 SMANTERFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 153
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 443 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 595
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 629 SMANTERFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 676
>AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical
protein C53D5.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 574 KILGSDGFQDIL-LTGFL*LSTKNQFIKYEVSFLKVKDDVQFTNTAKILVQQF 419
+ +G++ FQ+ + TGF+ T+ + + +K+ D++ N LV+QF
Sbjct: 3 EFIGNEEFQNFMKATGFIQEFTRRLLERSSKNIIKIPDNLSNVNQLTCLVKQF 55
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 494 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 640
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,501
Number of Sequences: 27780
Number of extensions: 305538
Number of successful extensions: 832
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -