Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N07
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.86 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.86 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.86 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   1.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.0  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    23   2.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.6  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   4.6  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   8.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.0  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 383 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 279
           LP V + + LL T FN   FM+  +V L +  L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 383 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 279
           LP V + + LL T FN   FM+  +V L +  L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 383 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 279
           LP V + + LL T FN   FM+  +V L +  L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 574 LQLTAKVDPSLIGGMVVSIGDKYVDMSVXSKVKKYTELISAAV 702
           LQ T     +L+GG+V S+G       V S  K    +ISAA+
Sbjct: 208 LQATVSFGTNLVGGIVRSLG-TLGSRVVESGTKLANMVISAAI 249


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 577 QLTAKVDPSLIGGMVVSIGDKYVDMSVXSKVKKYTELI 690
           QLTA V  ++ G + + I D Y+ +    K +K+  ++
Sbjct: 4   QLTACVGSAIAGFLFLLICDSYLKIYHKEKYRKFCRIL 41


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +1

Query: 565 NETLQLTAKVDPSLIGGMVVSIGDKYVDMSVXSKVKK 675
           NE  QL AK DP  I      I D Y D S     KK
Sbjct: 109 NEWNQLVAKYDPDGIYRKQYEIDDDY-DYSELDSAKK 144


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 386 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 279
           ++P   + + L+ T FN   FM+  +V L +  L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 386 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 279
           ++P   + + L+ T FN   FM+  +V L +  L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 494 LQPNH*IKHRGKIW 535
           L PN+ I+H+ K+W
Sbjct: 407 LPPNYEIRHKFKLW 420


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 154 VQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEF 294
           +Q   L  RY   L+   S   ALD+    +G     +  D  LK F
Sbjct: 134 IQTLKLAARYIDFLYHVLSNENALDV--DLIGNVCSYVVRDKLLKAF 178


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 628 IGDKYVDMSVXSKVKKY 678
           +G KY+DM +   ++KY
Sbjct: 344 LGMKYLDMVISETLRKY 360


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 522 LCLI*WFGCNNFTSYFTPVGSHHNLKSINDSLQFV 418
           +CL+ WF    FTS    +  +   + ++ S+ FV
Sbjct: 190 ICLLAWFIAALFTSPILAITQYGPEEYVDGSIVFV 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,738
Number of Sequences: 336
Number of extensions: 3567
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)