Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_N06
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 105 4e-23
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 103 1e-22
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 99 2e-21
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903... 65 7e-11
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304... 50 2e-06
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 31 1.4
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 30 1.9
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 29 4.3
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 29 5.7
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 105 bits (252), Expect = 4e-23
Identities = 43/92 (46%), Positives = 63/92 (68%)
Frame = +1
Query: 187 SKLRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRY 366
SKL+ W H AGPKTI FWAP FKWG+ IA + D +P E +S PQ +A +G+IW+R+
Sbjct: 67 SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARW 126
Query: 367 SLVIIPKNYSLFAVNVFVALTSLYQIGRAFKY 462
+VI P N++L +VN +A+T + Q+ R ++
Sbjct: 127 GMVITPINWNLSSVNAAMAVTGVCQLSRKIRH 158
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 103 bits (248), Expect = 1e-22
Identities = 45/86 (52%), Positives = 61/86 (70%)
Frame = +1
Query: 202 LWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVII 381
L+ + G TI FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI
Sbjct: 41 LYGIKTGHHTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVIT 100
Query: 382 PKNYSLFAVNVFVALTSLYQIGRAFK 459
PKN++LF+VNV +A T LYQ+ R +
Sbjct: 101 PKNWNLFSVNVAMAGTGLYQLSRKIR 126
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 99 bits (238), Expect = 2e-21
Identities = 42/86 (48%), Positives = 59/86 (68%)
Frame = +1
Query: 232 IFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVN 411
+ FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI PKN++LF+VN
Sbjct: 20 VHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLFSVN 79
Query: 412 VFVALTSLYQIGRAFKYQQALKNKEE 489
V +A T LYQ+ R + K++
Sbjct: 80 VAMAGTGLYQLSRKIRKDYFSDQKDD 105
>09_03_0104 -
12389907-12389943,12390086-12390203,12390339-12390393,
12391607-12391702
Length = 101
Score = 64.9 bits (151), Expect = 7e-11
Identities = 34/89 (38%), Positives = 49/89 (55%)
Frame = +1
Query: 220 GPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSL 399
GPKT FW P WG V+AGL D+N+P E +S +A L + R++ ++ P+NY L
Sbjct: 14 GPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL------FMRFAWMVQPRNYLL 67
Query: 400 FAVNVFVALTSLYQIGRAFKYQQALKNKE 486
A + LYQ+ R + Q L+ KE
Sbjct: 68 LACHASNESVQLYQMSRWARAQGYLEKKE 96
>08_02_0653 -
19729325-19729378,19730137-19730174,19730391-19730445,
19731401-19731496
Length = 80
Score = 50.4 bits (115), Expect = 2e-06
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 196 RPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLS 315
+ W GP+T FW P WG V+AGL D+N+P E +S
Sbjct: 6 KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMIS 45
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 239 KNIVLGPASCSHSGRSFDGTNLSADVTKTLYIRDILVCNFALPGELDKEGSVGFAK*CS 63
+ + + A CSH + LS D +K L+ + I + P EL+ + S+G K C+
Sbjct: 314 RKVTVSKACCSHDDAIYRMKPLSDDASKRLFYKRIFKHDNGCPPELE-QVSIGILKKCA 371
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.3 bits (65), Expect = 1.9
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Frame = +1
Query: 265 LVIAGLGDLNRPVE-TLSIPQSASLAATGIIWSRYSLVIIPKNYSLF--AVNVFVALTSL 435
L + L L R +E + +S S A T + R V + ++ +N F + S+
Sbjct: 462 LYVDNLMQLERTLERNAHLERSLSAATTEVEELREKKVALEESCKHLNSKINGFQSERSM 521
Query: 436 YQIGRAFKYQQALKNKEEKK*HFDIILLDN---LHIYFRKIHLSESTQHSTVNQNS 594
+ I R ++ EK + +L +N L I RK++ SE + H+ +NQNS
Sbjct: 522 F-IARIEGISHTMEKLSEKNVFLENLLSENNTELEILRRKLNDSEESTHALLNQNS 576
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 287 SPKPAITKPHLKAGAQKNIVLGPA-SCSHSGRS 192
SP PA P + GAQ+N+ GP H G S
Sbjct: 244 SPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSS 276
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/73 (24%), Positives = 28/73 (38%)
Frame = +1
Query: 82 PTDPSLSNSPGSAKLHTKMSRIYRVLVTSADKFVPSKLRPLWEHEAGPKTIFFWAPAFKW 261
P P L+ H S + LV +FV + P++ T+ FWAP F++
Sbjct: 63 PLGPDLARPQSEVSWHLGASAM-DALVNRVSEFVNAGFSPVFMK----LTVLFWAPTFRY 117
Query: 262 GLVIAGLGDLNRP 300
+ G P
Sbjct: 118 DMFTGGPSQQRSP 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,902
Number of Sequences: 37544
Number of extensions: 377343
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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