Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N06
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...    49   5e-06
Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        30   1.7  
U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.        30   1.7  

>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score =  120 bits (289), Expect = 1e-27
 Identities = 59/121 (48%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
 Frame = +1

Query: 145 IYRVLVTSADKFV----PSKLRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETL 312
           +Y+ L  + DKFV    P+  +P W H AGPKT+FFWAP  KW L+ AGL DL RP + L
Sbjct: 7   LYQALCKAGDKFVYPVLPAFAKPAWNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKL 66

Query: 313 SIPQSASLAATGIIWSRYSLVIIPKNYSLFAVNVFVALTSLYQIGRAFKYQQALKNKEEK 492
           S+ Q+++L ATG IW+RY LVI P NY L +VN FV  T L Q+ R   Y+    + E K
Sbjct: 67  SLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCRIAHYRYQNPDWETK 126

Query: 493 K 495
           +
Sbjct: 127 E 127


>Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +1

Query: 238 FWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVNVF 417
           FW P   WGL +A LGDL +  + +S P +++L     ++ R++  + P+N  LFA +  
Sbjct: 29  FWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHFA 88

Query: 418 VALTSLYQIGR 450
                  Q+GR
Sbjct: 89  NFSAQGAQLGR 99


>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 73  LANPTDPSLSNSPGSAKLHTKMSRIYRVLVTSAD 174
           L + TDP++   PGSA L + +   Y++L    D
Sbjct: 255 LTDETDPTIHMQPGSAPLESNLLEYYKMLADKGD 288


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 73  LANPTDPSLSNSPGSAKLHTKMSRIYRVLVTSAD 174
           L + TDP++   PGSA L + +   Y++L    D
Sbjct: 255 LTDETDPTIHMQPGSAPLESNLLEYYKMLADKGD 288


>U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.
          Length = 685

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 73  LANPTDPSLSNSPGSAKLHTKMSRIYRVLVTSAD 174
           L + TDP++   PGSA L + +   Y++L    D
Sbjct: 255 LTDETDPTIHMQPGSAPLESNLLEYYKMLADKGD 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,410,538
Number of Sequences: 27780
Number of extensions: 363575
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)