Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N02
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   4.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   9.7  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.7  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 663 HIVAHGHQQNRDKVKPCLPLWTLLRPRLKKGC 568
           H + H  + NR+++KP  P+  L  P+  KGC
Sbjct: 303 HDIQHRARVNREEIKPRWPMIILRTPK-GKGC 333


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 616  WLDFIPVLLMSVSDDVFSTS*IICLFIIKTKSLIVYLTIHSTKYPIA 756
            WL FIP LL S+S      + ++   I K+    ++ T+ + +  IA
Sbjct: 3063 WLTFIPQLLNSLSKGDTKCAPVVLKKIAKSYPQALFFTLRTAREDIA 3109


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -2

Query: 773  NKILSIAXGYFVE*IVKYTINDFVFMINKHMIHDVENTSSLTDISKTGIKSSHVYRYGLF 594
            N++L       +  I+ +T  DF+   +K +   +++   +TD + +G K  HV    +F
Sbjct: 1048 NRVLLALSSTLLNLILVFTSADFMSETSKTLNMALKSEFDMTDFNNSGSKLMHVLHARIF 1107


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 276 PPYPYSNFPLPFS 238
           P YPY  FP PFS
Sbjct: 454 PSYPYPMFPAPFS 466


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 710 DFVFMINKHMIHDVENTSSLTDISKTGIKSSHVYRYGLFSDLV 582
           D  F   +  + D+E+T     I+++G+  S V+RYGLF + V
Sbjct: 460 DQCFTSKRRSLVDIEST-----INQSGLSGS-VFRYGLFENYV 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,259
Number of Sequences: 5004
Number of extensions: 66107
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)