Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N02
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530...    30   2.5  
04_03_0274 + 13746294-13746323,13747339-13747639,13747692-13748092     29   3.3  
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    29   4.4  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    29   4.4  
01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538           29   4.4  

>01_01_0690 -
           5306754-5307047,5307107-5307279,5308223-5308370,
           5309110-5309356,5309694-5309839,5312482-5312707,
           5313652-5313874,5314054-5314202,5315345-5315514,
           5316064-5316135,5317610-5317741,5317813-5317900,
           5319440-5319656,5320123-5320306,5320644-5320727,
           5321148-5321242,5321519-5321562,5321707-5322367,
           5323053-5323356
          Length = 1218

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 603 WTLLRPRLKKGCHRAQEKPWFIPK--PNGTQQKG 508
           W  L P+L +  H    KPW +P   PNGT+QKG
Sbjct: 877 WVSLNPKLLE--HFKPSKPW-VPAITPNGTKQKG 907


>04_03_0274 + 13746294-13746323,13747339-13747639,13747692-13748092
          Length = 243

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 127 NAHFDRFSDHCRVYDTATKGAEFPIF*KA*LPLSLLRRKRQ----RKIAVRIW 273
           NAH  +F ++C  Y  A KG           P+SLLRR +Q     + AV  W
Sbjct: 23  NAHLQQFLENCNTY--AIKGVSPDTVRLRLFPVSLLRRAKQWFYANRAAVNTW 73


>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 82  KSNQIKDGVCEMF--LCNAHFDRFSDHCRVYDTATKG 186
           +S Q  +G   +F  LCNA   +FS HCR  D    G
Sbjct: 140 ESEQAANGEEALFCTLCNAEVRKFSKHCRSCDKCVDG 176


>04_03_0998 -
           21555696-21556080,21556177-21556254,21556333-21556424,
           21556524-21556620,21557113-21557141,21557620-21557781,
           21557981-21558061,21558156-21558314,21558394-21558510,
           21558598-21558666,21558753-21558831,21560884-21561050,
           21561109-21561229,21561522-21561649,21562293-21562361,
           21562408-21562539,21562619-21562991,21563274-21563398,
           21563500-21563655,21563785-21564198,21564634-21564691,
           21566522-21566648,21568047-21568305,21569005-21569104,
           21569231-21569317,21569454-21569692,21569914-21569999,
           21570409-21570532,21571111-21574332
          Length = 2444

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 43  TLSVATK*PRFKGKSNQIKDGVCEMFLCNAHFDRFSDH----CRVYDTATKG 186
           T   +T+ PR  GKS+ ++D   E+   N      S+H    CRV ++ T G
Sbjct: 52  TSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYG 103


>01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538
          Length = 336

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 576 KGC-HRAQEKPWFIPKPNGTQQKGCL 502
           +GC HR  ++ WF P+ N  ++KG L
Sbjct: 9   QGCRHRPSKEMWFSPRENSPREKGIL 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,838,458
Number of Sequences: 37544
Number of extensions: 362096
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)