Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_N02
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical...    30   2.3  
AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical...    30   2.3  
AF083230-1|AAD03688.1|  115|Caenorhabditis elegans nuclear recep...    30   2.3  
AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormo...    30   2.3  
U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    28   9.2  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    28   9.2  

>AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10a protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 731 IVKYTINDFVFMINKHMIHDVENTSSLTDISKTGIKSSHVYRYGLFSDLV*RRDVIALRK 552
           ++K   +D+  +++KH IH     +   ++   GI+S  V R+G   + V   D +    
Sbjct: 63  LLKKRGSDYGRLLSKHKIHHSYLNTLQRELENAGIESRLVRRFGYTQEAVDWADAVFSAG 122

Query: 551 NHGSF--QSRMVRSK 513
             G+F   S  VR+K
Sbjct: 123 GDGTFLMASSRVRTK 137


>AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10b protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 731 IVKYTINDFVFMINKHMIHDVENTSSLTDISKTGIKSSHVYRYGLFSDLV*RRDVIALRK 552
           ++K   +D+  +++KH IH     +   ++   GI+S  V R+G   + V   D +    
Sbjct: 124 LLKKRGSDYGRLLSKHKIHHSYLNTLQRELENAGIESRLVRRFGYTQEAVDWADAVFSAG 183

Query: 551 NHGSF--QSRMVRSK 513
             G+F   S  VR+K
Sbjct: 184 GDGTFLMASSRVRTK 198


>AF083230-1|AAD03688.1|  115|Caenorhabditis elegans nuclear receptor
           NHR-15 protein.
          Length = 115

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 109 CEMFLCNAHFDRFSDHCRVYDTATKGAEF 195
           C+MF      DR + HC+ +D    G EF
Sbjct: 53  CKMFFRRVEVDRITYHCKYWDRCYDGQEF 81


>AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 15 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 109 CEMFLCNAHFDRFSDHCRVYDTATKGAEF 195
           C+MF      DR + HC+ +D    G EF
Sbjct: 53  CKMFFRRVEVDRITYHCKYWDRCYDGQEF 81


>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 669 NIMNHMFVYHKNKIVNCIF-DNSFYKISXCNR 761
           N+  H    HK  IVNC F  NS+  I+ C R
Sbjct: 180 NLFIHPLASHKGYIVNCQFMKNSYDMITVCKR 211


>Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.9 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +1

Query: 661 VFSTS*IICLFIIKTKSLIVYL---TIHSTKYPIAIDNILLCKYLSIXFDKYII 813
           + +T  +  +F+I    L+  L   + H+ +Y I+  +ILL  + S  FD+YI+
Sbjct: 90  ICATMRVTLVFLISFDRLMASLFPISYHNHRYKISTYHILLIVFCSAFFDQYIL 143


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 119 FFAMLILIVSLITVESTIPQPRAPNFQYFERPNYRYPYYDEN 244
           +FA+ + +V ++++   +   +AP   + E   Y   Y+DEN
Sbjct: 797 YFALFMYLVFIVSLTQYVRHTKAPYNVWNEESYYDSEYFDEN 838


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
           receptor potential subfamilyA-1 protein.
          Length = 1206

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 119 FFAMLILIVSLITVESTIPQPRAPNFQYFERPNYRYPYYDEN 244
           +FA+ + +V ++++   +   +AP   + E   Y   Y+DEN
Sbjct: 810 YFALFMYLVFIVSLTQYVRHTKAPYNVWNEESYYDSEYFDEN 851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,295
Number of Sequences: 27780
Number of extensions: 364015
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)