Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M23
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   2.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   3.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   3.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 179 RPHMGLSINFYTRTEFYRE*L*SDILNTAEKLVLRNTCINVT 304
           R H  +S + +++ +FYR+   +++LN   +  L   CI VT
Sbjct: 34  RYHQQISGDRFSK-DFYRQDTKNNLLNAYVRFKLVTDCIFVT 74


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = -1

Query: 236 ILYKI---QSLCKNLLKAPYEVSRSNTSCRT 153
           +LY +   Q LC  L+  PY +   NT   T
Sbjct: 10  LLYSVAMSQRLCIQLVVGPYVIGLMNTMTHT 40


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = -1

Query: 236 ILYKI---QSLCKNLLKAPYEVSRSNTSCRT 153
           +LY +   Q LC  L+  PY +   NT   T
Sbjct: 9   LLYSVAMSQRLCIQLVVGPYVIGLMNTMTHT 39


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 222 NFIENNFNQIY*ILLKNLYY 281
           N+  NN+ ++Y    K LYY
Sbjct: 90  NYNNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 222 NFIENNFNQIY*ILLKNLYY 281
           N+  NN+ ++Y    K LYY
Sbjct: 90  NYNNNNYKKLYCNNYKKLYY 109


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 NFIENNFNQIY*ILLKNLYY 281
           N+  NN+N  Y    K LYY
Sbjct: 337 NYNNNNYNNNYNNNCKKLYY 356


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 296 NVT*ILFIILNVSCHNKHI 352
           N+  +LF+I+NV  H + I
Sbjct: 6   NIFPVLFVIINVLLHGQVI 24


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 222 NFIENNFNQIY*ILLKNLYYETHV 293
           N+  NN+   Y    K LYY+ ++
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYKNYI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,571
Number of Sequences: 438
Number of extensions: 1539
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)