Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_M22
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 30 1.3
SB_46344| Best HMM Match : ig (HMM E-Value=0.0082) 29 4.1
SB_53860| Best HMM Match : fn3 (HMM E-Value=3.6e-07) 28 5.4
SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12) 28 5.4
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 7.1
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 28 7.1
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 7.1
SB_33268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39) 27 9.4
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +1
Query: 469 IEEKRQRLEEAXKKRQAMLQAMKDA 543
+EE+R+RLE K+RQA QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 522 APGHE--RCQQDRTQLHHPKEERKLRFEQ 602
APGH+ RC QD +L+ K ERK R EQ
Sbjct: 1105 APGHQPLRCLQDVEELYLSKVERKDRLEQ 1133
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 472 EEKRQRLEEAXKKRQAMLQAMKDASKTGPNFTIQKKSEN 588
EE+RQ+ EEA K+R+ L A K++SK+ +++S N
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGN 1381
>SB_46344| Best HMM Match : ig (HMM E-Value=0.0082)
Length = 181
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 86 LGTGSWTGSTATLECGVRGXP 24
+ T SW G +L+C VRG P
Sbjct: 1 MNTSSWDGKVLSLQCKVRGLP 21
>SB_53860| Best HMM Match : fn3 (HMM E-Value=3.6e-07)
Length = 288
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 98 VTQSLGTGSWTGSTATLECGVRGXP 24
V+ + T SW G +L+C RG P
Sbjct: 2 VSSTTNTSSWDGKVLSLQCKARGVP 26
>SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)
Length = 519
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 104 KSVTQSLGTGSWTGSTATLECGVRGXP 24
K ++ T SW G +L+C RG P
Sbjct: 368 KDGASTMNTSSWDGKVLSLQCKARGLP 394
>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 202 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 321
PA ++EGEG+P+ +R+ Q + ++Q K + +K ++
Sbjct: 56 PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95
>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 337
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 403 RGAFLLRHEKPCAWPASL*GV 341
RGA L R+E PC W A L G+
Sbjct: 69 RGAALQRNEPPCMWIAILNGI 89
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 466 DIEEKRQRLEEAXKKRQAMLQAMKDASKTGPNFT 567
++EEK++RL+ + + ++ +A K+ASK+ + T
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT 460
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 466 DIEEKRQRLEEAXKKRQAMLQAMKD 540
D+EEK + LEEA + +A+ MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546
>SB_33268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 481 RQRLEEAXKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAXLER 618
R+ LEE K+ A LQA D + ++K S+ G S LER
Sbjct: 5 REVLEELLDKKLAPLQASLDFLNDKYDIILKKVSDQEGKSKRTLER 50
>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
Length = 378
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 119 VSHG*KSVTQSLGTGSWTGSTATLECGVRGXP 24
V++ + V+ + T SW + +L+C VRG P
Sbjct: 285 VNYKPEMVSSTTNTSSWDRNVLSLQCKVRGVP 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,995
Number of Sequences: 59808
Number of extensions: 220342
Number of successful extensions: 814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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