Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M18
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.3  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.3  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   3.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.3  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   7.0  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 267 VSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLSH-NSFHRMRNSFHY 133
           + N+D+Q    + +  Y +    KMA    L+H     R+ +SF +
Sbjct: 301 IDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSSFAF 346


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 267 VSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLSH-NSFHRMRNSFHY 133
           + N+D+Q    + +  Y +    KMA    L+H     R+ +SF +
Sbjct: 302 IDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSSFAF 347


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 267 VSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLSH-NSFHRMRNSFHY 133
           + N+D+Q    + +  Y +    KMA    L+H     R+ +SF +
Sbjct: 302 IDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSSFAF 347


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -2

Query: 216 DSHNYSK-MAYNLTLSHNSFHRMRNSFHYYRXYDI 115
           D H + K  A +     NS H+ +  FH  R  DI
Sbjct: 85  DKHGFLKEKAVDFLTILNSMHKYQPRFHLVRANDI 119


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 339 FRILTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTTVSNYDSHN 205
           FR   I+    +   YF+   + T S   +   SST  +N D +N
Sbjct: 358 FRTGFIICSESNRKFYFKRARNGTFSTTANSCRSSTFRNNRDEYN 402


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -2

Query: 255 DSQNCSSTTVSNYDSHNYSKMAYNLTLSH-----NSFHRMRNSFHYYRXYDI 115
           DS +     +    S +  K+  N++  H     NS H+ +  FH  R  DI
Sbjct: 59  DSPSTGEQWMQKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRANDI 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,300
Number of Sequences: 336
Number of extensions: 1922
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)