Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_M18
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39109| Best HMM Match : PT (HMM E-Value=5) 46 2e-05
SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05) 34 0.092
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 34 0.12
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015) 31 0.65
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 30 2.0
SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3) 30 2.0
SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8) 29 2.6
SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6) 29 2.6
SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7) 29 3.5
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_50256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 29 4.6
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26) 29 4.6
>SB_39109| Best HMM Match : PT (HMM E-Value=5)
Length = 231
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/111 (19%), Positives = 50/111 (45%)
Frame = -2
Query: 615 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 436
+ Q+ S YF++ ++ + S YF++ + + S YF+S + + ++ Y
Sbjct: 38 VLQVASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREY 97
Query: 435 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 283
F+ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 98 FKSPVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKS 148
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/131 (18%), Positives = 56/131 (42%)
Frame = -2
Query: 675 FQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKD 496
F++ + + S + + Q+ S YF++ ++ + S YF+ + +
Sbjct: 66 FKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTS 125
Query: 495 SSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILI 316
S YF+S + + ++ YF+ + + S YF S + + ++ YF+ + +
Sbjct: 126 SREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQV 185
Query: 315 QMKDSSAYFRN 283
S YF++
Sbjct: 186 ASTSSREYFKS 196
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/111 (19%), Positives = 49/111 (44%)
Frame = -2
Query: 615 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 436
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 102 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 161
Query: 435 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 283
F+ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 162 FKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKS 212
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/111 (19%), Positives = 49/111 (44%)
Frame = -2
Query: 615 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 436
+ Q+ S YF++ ++ + S YF+ + + S YF+S + + ++ Y
Sbjct: 118 VLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREY 177
Query: 435 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 283
F+ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 178 FKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKS 228
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/131 (18%), Positives = 56/131 (42%)
Frame = -2
Query: 675 FQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKD 496
F+ + + S ++ + Q+ S YF++ ++ + S YF+ + +
Sbjct: 50 FKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTS 109
Query: 495 SSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILI 316
S YF+S + + ++ YF+ + + S YF S + + ++ YF+ + +
Sbjct: 110 SREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQV 169
Query: 315 QMKDSSAYFRN 283
S YF++
Sbjct: 170 ASTSSREYFKS 180
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/111 (18%), Positives = 48/111 (43%)
Frame = -2
Query: 615 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 436
+ Q+ S Y ++ ++ + S Y + + + S YF+S + + ++ Y
Sbjct: 6 VLQVASTPSRQYSKSPVLQVASTPSRQYSKSPVLQVASNSSRQYFKSPVLQVASTSSRQY 65
Query: 435 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 283
F++ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 66 FKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKS 116
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/111 (18%), Positives = 47/111 (42%)
Frame = -2
Query: 615 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 436
+ Q+ S Y ++ ++ + S YF+ + + S YF+ + + ++ Y
Sbjct: 22 VLQVASTPSRQYSKSPVLQVASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREY 81
Query: 435 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 283
F+ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 82 FKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTSSREYFKS 132
>SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)
Length = 223
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 328 QDPEVNQVIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILH 504
+D + Q +P GSG++ ++ +L + + D E + L H S H+A +VN + H
Sbjct: 165 EDGRLIQTVP--GSGYKYEDLRPCLLRMSEVLLDLENMECKLRHASNHEAADVNDQLTH 221
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Frame = +1
Query: 214 VIVTHRRTRAVL---GVIVTHRRTRAVPEVSRAILHLDQDCQDPEVNQVIPH-HGSGHQA 381
+I TH + A+ +I TH + A+ R ++H + I H H H A
Sbjct: 329 IIRTHSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSHPHALSFTRTIIHTHSHSHHA 388
Query: 382 REVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILHQY 510
+ ++H ++H S AL R I+H +
Sbjct: 389 LSFTCTLIHTHSHSLALSFTSTLIHTHSHSHALSFTRTIIHMH 431
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +1
Query: 349 VIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILH-HGSGHQALEVNRAILHQYRDCQD 525
+I H H R ++H + I+H H H AL ++H +
Sbjct: 345 LIHTHSHSHALSFTPRTVIHTHSHPHALSFTRTIIHTHSHSHHALSFTCTLIHTHSHSLA 404
Query: 526 LEVSRAILHQYRDYQGLEVSRAIPH 600
L + ++H + L +R I H
Sbjct: 405 LSFTSTLIHTHSHSHALSFTRTIIH 429
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 379 AREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILH 552
A +R I+H + ++H S AL R ++H + L +R I+H
Sbjct: 237 ALSFTRTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIH 294
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 442 QVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILHQYRDYQGLEVSRAIPHQDL 609
+ I+H S L R ++H + L +R ++H + L +R I H L
Sbjct: 242 RTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTL 297
>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 32.7 bits (71), Expect = 0.28
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = -2
Query: 426 LTILIQMKDSSAYFPSL-MTRTMMRNNLVYFRIL---TILIQMKDSSAYFRNCSSTTVSN 259
+T Q SS Y MT N+ Y+ ++ T Q S+ Y+ T+ +
Sbjct: 291 MTSYAQYNSSSDYHLMYHMTSYAQYNSSSYYYLMYHMTSYAQYNSSNDYYLMYHMTSYAQ 350
Query: 258 YDSQNCSSTT--VSNYDSHNYSKMAYNLTLSHNSFHRMRNSFHYYRXYDIAQYMH*NT 91
Y+S + +++Y +N S Y+L S+ R +S +YY Y + Y N+
Sbjct: 351 YNSSSYYHLMYHMTSYAQYN-SSSDYHLMYHMTSYARFNSSSYYYLMYHMTSYAQYNS 407
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -2
Query: 330 LTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTT--VSNYDSHNYSKMAYNLTLSHNSFH 157
+T Q SS Y+ T+ + Y+S + +++Y +N S Y+L S+
Sbjct: 147 MTSYAQYNSSSYYYLMYHMTSYAQYNSSSDYYLMYHMTSYAQYN-SSSDYHLMYHMTSYA 205
Query: 156 RMRNSFHYYRXYDIAQYMH*NT 91
+ +S YY Y + Y N+
Sbjct: 206 QYNSSSDYYLMYHMTSYAQYNS 227
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -2
Query: 330 LTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTT--VSNYDSHNYSKMAYNLTLSHNSFH 157
+T Q SS Y T+ + Y+S + +++Y +N S Y+L S+
Sbjct: 219 MTSYAQYNSSSYYHLMYHMTSYAQYNSSSDYYLMYHMTSYAQYN-SSSDYHLMYHMTSYA 277
Query: 156 RMRNSFHYYRXYDIAQYMH*NT 91
R +S YY Y + Y N+
Sbjct: 278 RYNSSSDYYLMYHMTSYAQYNS 299
>SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)
Length = 254
Score = 31.5 bits (68), Expect = 0.65
Identities = 22/120 (18%), Positives = 56/120 (46%)
Frame = -2
Query: 669 ILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSS 490
I+T+ ++MK ++ + +++ I+M + T+I+ + M + + + I+M +
Sbjct: 131 IMTLAMMMKTLIITVAMIMMTIVMT-LAMLMMTIIMTVAMIMTIIMTVAMIMIIIMTVAM 189
Query: 489 VYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQM 310
+ +MT M+ + + I++ M +MT+ M ++ I+T+ + M
Sbjct: 190 IMMTIIMTVAMLMMTKILTLAMMIMMMMTKIMTLAMMMMTKIMTLAMMMMTIIMTLAMMM 249
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 29.9 bits (64), Expect = 2.0
Identities = 34/130 (26%), Positives = 57/130 (43%)
Frame = +2
Query: 260 LLTVVLEQFRK*AELSFIWIRIVRIRK*TKLFLIMVRVIKLGK*AELSFIWIRIVRIRK* 439
++ + + F A SFI I IV I + +I+ + + A S I I I I
Sbjct: 26 IIVIAIASFSVIATASFIVIAIVSIIVISIASIIVTAIASIIVIAIASIIVIVIASIIVI 85
Query: 440 TKLFFIMVRVIKLWK*TELSFINIGIVRIWK*AELSFINIGIIRVWK*AELSLIRIWAIR 619
FI++ + + +SFI I I I A +SFI I I + ++++R+ A
Sbjct: 86 AIASFIVIAIASIIVIAIVSFIVIAIASIIVIAIVSFIVIAIASI---MVIAIVRVVASA 142
Query: 620 ICKQTKLSFI 649
I T + +
Sbjct: 143 IATATAIVLV 152
>SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3)
Length = 194
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 469 HQALEVNRAI-LHQYRDCQDLEVSRAILHQ-YRDYQGLEVSRA 591
+++ EV RA L YR + EV+R + YR Y+G EV+RA
Sbjct: 11 YESTEVTRAQKLRGYRSYEGTEVTRVQKSRGYRSYEGTEVTRA 53
>SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8)
Length = 273
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 469 HQALEVNRAI-LHQYRDCQDLEVSRAI-LHQYRDYQGLEVSR 588
++ EV R + L YR + EV+R L YR+Y+G E++R
Sbjct: 78 YEGTEVMRVLKLRGYRSYESTEVTRVQKLRGYRNYEGTEITR 119
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 433 EVNQVILHHG-SGHQALEVNRAI-LHQYRDCQDLEVSRAI-LHQYRDYQGLEVSRAI 594
EV +V+ G +++ EV R L YR+ + E++R L YR Y+G EV R +
Sbjct: 82 EVMRVLKLRGYRSYESTEVTRVQKLRGYRNYEGTEITRVQKLRGYRSYEGTEVPRVL 138
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +1
Query: 373 HQAREVSRAI-LHLDQDCQDPEVNQVILHHG-SGHQALEVNRAI-LHQYRDCQD-LEVSR 540
+++ EV+R + L + + EV +V+ G ++ E+ R L YR+ ++ + V +
Sbjct: 12 YESTEVTRVLKLRGYKSYESTEVTRVLKLRGYRSYEGTEITRVQKLRGYRNYEEFMRVQK 71
Query: 541 AILHQYRDYQGLEVSRAI 594
L +YR Y+G EV R +
Sbjct: 72 --LREYRSYEGTEVMRVL 87
>SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)
Length = 353
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 288 RNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAY 187
R C S +S Y+S C S +S Y+ + AY
Sbjct: 64 RECQSVELSAYESVKCQSVELSAYECQSVELFAY 97
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 288 RNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAY 187
R C S +S Y+S C S +S Y+ + AY
Sbjct: 161 RECQSVELSAYESVKCQSVELSAYECQSVELSAY 194
>SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)
Length = 573
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 LLTVVLEQFRK*AELSFIWIRIVRIRK*TKL---FLIMVRVIKLGK*AELSFIWIRIVRI 430
+L V+ Q K L ++ +V+IR + L + +MV++ L L F+ ++I +
Sbjct: 445 ILVVINRQAPKTCPLEALYFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIRVL 504
Query: 431 RK*TKLFFIMVRVIKLWK*TELSFINI 511
L+F+MV++ L L F+ +
Sbjct: 505 SPLEALYFVMVKIRVLSPLEALYFVMV 531
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -2
Query: 582 YFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMK 403
YF + I IL + YF ++ I +L ++YF + R + +YF ++ I +
Sbjct: 463 YFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSP 522
Query: 402 DSSAYF 385
+ YF
Sbjct: 523 LEALYF 528
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -2
Query: 534 YFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMR 355
YF ++ I IL ++YF + R + +YF ++ I + + YF + R +
Sbjct: 463 YFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSP 522
Query: 354 NNLVYF 337
+YF
Sbjct: 523 LEALYF 528
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/144 (16%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Frame = -2
Query: 672 QILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDS 493
Q ++ P L S L+ + + + Y Q++ +P L S + + L P+ +
Sbjct: 40 QSISEPPLTTSSPSQYHPLLHPVHLSTTPYYIQSISVPPLTTSSPSQYHPLLHPVHLSTI 99
Query: 492 SVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQ 313
Y QS+ + ++ + L + + Y S+ ++ ++ + L +
Sbjct: 100 PYYIQSISVPPLTTSSPSQYHPLLHPVHLSTIPYYIQSISVPSLTTSSPSQYHPLPHPVH 159
Query: 312 MKDSSAYFRNCSSTTVSNYD-SQN 244
++ + Y ++ S ++ + SQN
Sbjct: 160 LRTTLFYIQSISEPPLTTFSPSQN 183
>SB_50256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 29.1 bits (62), Expect = 3.5
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Frame = -2
Query: 639 SLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRT 460
SL C++ L Q ++ Y QT ++ ++ Y Q T ++ ++VY + RT
Sbjct: 90 SLTCIKRLPVQY----TTVYSQTCTKRPPVQYTTVYSQTCTKRPPVQHTTVYSHTCTKRT 145
Query: 459 MMKNNLVYFRILTILIQMKDSSAYFPSLMTR-----TMMRNNLVYFRILTILIQMKDSSA 295
++ +VY++ T ++ + Y + R TM+ +++ T+++ M S
Sbjct: 146 PVQYTMVYWQTCTKRPPVQYTMVYSQTCTKRPPVQYTMVNIQSSTYKMTTVMVVMTHRSV 205
Query: 294 YFRNCSSTTVSNYDSQNCSSTTV 226
R + + D + S+T V
Sbjct: 206 QTRAVAQENTTWQDEDSYSNTGV 228
>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = -2
Query: 351 NLVYFRILTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLS 172
NL+Y ++ + +SA C +S D QNC + SK AY
Sbjct: 536 NLLYIYPQSVNFSSRGTSARNIACKVQIMSGEDEQNCIECIFGKSSCASMSKEAYTHVTY 595
Query: 171 HN 166
HN
Sbjct: 596 HN 597
>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
Length = 633
Score = 28.7 bits (61), Expect = 4.6
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = -2
Query: 477 SLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSS 298
SL+TRT+ K +LT ++ ++S SL+TRT+ + N + +LT + ++S
Sbjct: 177 SLLTRTLRKYKTS--SLLTRTLRKHNTS----SLLTRTLRKYNTSF--LLTRTSRKYNTS 228
Query: 297 AYF------RNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLSHNSFHRMRNSFH 136
+ N SS N SS + HN S + HN+ + +
Sbjct: 229 SLLTRALRKHNTSSLLTRTLRKYNTSSLLTRTFRKHNTSSLLTRTMRKHNTSSLLTRTLR 288
Query: 135 YY 130
Y
Sbjct: 289 KY 290
>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
Length = 589
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = -2
Query: 366 TMMRNNLVYFRILTI-LIQMK-DSSAYFRNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKM 193
T++R+ L Y ++ I +I M SS+ + SS++ S+ +Q + + S+ +H + +
Sbjct: 447 TIIRHYLHYVVVINIFIIDMSISSSSSSSSSSSSSSSSTGAQLLTPSKPSSNHNHYHRRR 506
Query: 192 AYNLTLSHNSFHRMRNS 142
++ HN HR +++
Sbjct: 507 HHHRNYRHNHHHRHQHN 523
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,910
Number of Sequences: 59808
Number of extensions: 250719
Number of successful extensions: 869
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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