Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M17
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)             63   3e-10
SB_30790| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)                       30   1.9  
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)                     29   4.5  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)
          Length = 228

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 1/179 (0%)
 Frame = +2

Query: 209 ENMTTFKPVTHVLFDMDGLILNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAG 388
           E +T  + V  ++FD DG +L+T  L+   + K+    G +F  E    + G   ++   
Sbjct: 4   ERLTISEGVKGLVFDCDGTLLDTMPLHWRAWCKICDETGLRFNKEDFYVLAGVPGKKIID 63

Query: 389 NIIKYLDLPLT-IEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKE 565
            + +   + L  +E + S+ +    EL   S I   V K ++   +  IP+ +A+ SSK+
Sbjct: 64  VLARQQGVVLDPLEVYESKRKYFLSELASVSPI-QCVLKYVHEARKRGIPVAVASGSSKK 122

Query: 566 SYELKTLKHQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPDLEKCLVFED 742
             E K LK   + +LF    LG+ D      KPHPD F+ AA K+L     + C  FED
Sbjct: 123 QVE-KALKDTGILELFD-VILGNED--YTNHKPHPDAFLTAA-KYLGVA-AKDCWGFED 175


>SB_30790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 27/72 (37%), Positives = 41/72 (56%)
 Frame = +2

Query: 275 TEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSETRQI 454
           TE +YT   QK+   YGK F   LK RIMG         +I  + LP+T+++F+S+   +
Sbjct: 2   TERIYTDITQKICQEYGKTFDISLKQRIMGNSKHVSTKVVINEMQLPITVDEFLSKAGAL 61

Query: 455 FEELFPQSEILP 490
              LFP +++LP
Sbjct: 62  NLTLFPTAKLLP 73


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 242 VLFDMDGLILNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLT 421
           +L +   L+L TEDLYT     +  R    FT ++ +R   + ++E    +I+   + LT
Sbjct: 134 LLLEPRSLLLLTEDLYTSYLHGIEGRAHDIFTTDIVNREQCKLSKELGSTLIRSTRISLT 193

Query: 422 I 424
           I
Sbjct: 194 I 194


>SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)
          Length = 1007

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 738 SKTRHFSKSGLSRNLLAATINISGCGFPLFTSGSEEPKVLCENKSN 601
           S  +H + S ++R     T+N+SGC   LF +   +  +   N SN
Sbjct: 729 SNQQHAATSAINRTFKITTLNVSGCKIWLFENSISQSTLNGRNGSN 774


>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
          Length = 529

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 554 SSKESYELKTLKHQDLFDLF----SHKTLGSSDPDVKRGKPH-PDIFIVAANKFLDKPDL 718
           S K++  L TL  + L  LF    + K +GS DPD +RG P+ P++      K   + D 
Sbjct: 267 SDKDAGRLNTLLSKLLKTLFDERETEKKIGS-DPDKERGLPNIPNLLSAFVKKIFKEKD- 324

Query: 719 EKCLVFED 742
           EK LV  D
Sbjct: 325 EKQLVNND 332


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 434  VSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATS 553
            VSE ++      P  E + GVK +  H++  N+P+GL +S
Sbjct: 996  VSEPQKQVLRKLPVFETVGGVKGMAKHVSIENVPVGLESS 1035


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,344,431
Number of Sequences: 59808
Number of extensions: 466875
Number of successful extensions: 1262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)